miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 130043 0.71 0.930738
Target:  5'- uGCAAgcuaaagccGCGccuuauUGCGCCGAUGACGgGCg -3'
miRNA:   3'- -CGUUaa-------CGCu-----GCGCGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 129333 0.7 0.946165
Target:  5'- cGCGcGUUGCuGAcCGCGCCGAaaccgaccgagcccaAACGUGCc -3'
miRNA:   3'- -CGU-UAACG-CU-GCGCGGCUa--------------UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 129204 0.66 0.99595
Target:  5'- -----cGCGcACaauuuuaGCGCCGAugaaguUAACGUGCa -3'
miRNA:   3'- cguuaaCGC-UG-------CGCGGCU------AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 129007 0.66 0.997138
Target:  5'- aCAAUUGUGcaACGCGCUaaAUGACcUGCa -3'
miRNA:   3'- cGUUAACGC--UGCGCGGc-UAUUGcACG- -5'
22911 3' -49.8 NC_005137.2 + 128975 0.68 0.987449
Target:  5'- aGCAAauaaggcGCGACcuaaauagucuGCGCCGc-AGCGUGCa -3'
miRNA:   3'- -CGUUaa-----CGCUG-----------CGCGGCuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 125025 0.67 0.989537
Target:  5'- uCGGUUGCGGCGUggcgcaggcaacggaGCCGGgcgGCGcgGCg -3'
miRNA:   3'- cGUUAACGCUGCG---------------CGGCUau-UGCa-CG- -5'
22911 3' -49.8 NC_005137.2 + 124950 0.77 0.671176
Target:  5'- -gGGUUGCGAUgaacgcgGCGCCGGUGAUGggGCg -3'
miRNA:   3'- cgUUAACGCUG-------CGCGGCUAUUGCa-CG- -5'
22911 3' -49.8 NC_005137.2 + 123973 0.81 0.483539
Target:  5'- uGCGAUUGCGGCGacgagGCCGugacgcGCGUGCg -3'
miRNA:   3'- -CGUUAACGCUGCg----CGGCuau---UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 123102 0.66 0.99595
Target:  5'- gGCAAaUGCGcaauggaGCuGCGCCGG---UGUGCa -3'
miRNA:   3'- -CGUUaACGC-------UG-CGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 122535 0.66 0.996015
Target:  5'- cGCuaagGCGGCGgGCgug-GGCGUGCu -3'
miRNA:   3'- -CGuuaaCGCUGCgCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 122148 0.67 0.993676
Target:  5'- uGUAGUUGUGcCGUGUCGuUGAUGaGCg -3'
miRNA:   3'- -CGUUAACGCuGCGCGGCuAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 122060 0.71 0.940976
Target:  5'- -aAAUUGCGGCGUGuCCGGgucGGCG-GCc -3'
miRNA:   3'- cgUUAACGCUGCGC-GGCUa--UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 119575 0.73 0.871888
Target:  5'- -----aGCGACGCacGCUGAgcACGUGCc -3'
miRNA:   3'- cguuaaCGCUGCG--CGGCUauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 119535 0.66 0.996015
Target:  5'- cGCAAUccGCuGACGUGUCGAguGCGUuuaGCc -3'
miRNA:   3'- -CGUUAa-CG-CUGCGCGGCUauUGCA---CG- -5'
22911 3' -49.8 NC_005137.2 + 118935 0.68 0.983925
Target:  5'- uGCGGUcgGCGACGUgauuGCCGAccgacUGGCGUa- -3'
miRNA:   3'- -CGUUAa-CGCUGCG----CGGCU-----AUUGCAcg -5'
22911 3' -49.8 NC_005137.2 + 118792 0.7 0.958374
Target:  5'- aGCGAUgaagcguuacaUGCGcGCGUGCCuAUggUGUGCc -3'
miRNA:   3'- -CGUUA-----------ACGC-UGCGCGGcUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 117569 0.67 0.992583
Target:  5'- gGCAAagUGCG-C-CGCCGGUgcggcugacgggcGACGUGUa -3'
miRNA:   3'- -CGUUa-ACGCuGcGCGGCUA-------------UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 117459 0.7 0.945706
Target:  5'- aCAGUUGCGcCGCGCUauuaaaGUGACGgucgGCg -3'
miRNA:   3'- cGUUAACGCuGCGCGGc-----UAUUGCa---CG- -5'
22911 3' -49.8 NC_005137.2 + 113868 0.79 0.544686
Target:  5'- aUAGUUGCG-CGUGCUGGUGACG-GCa -3'
miRNA:   3'- cGUUAACGCuGCGCGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 112401 0.67 0.990345
Target:  5'- cGCGAUcGCGcacgGCGCGCCau---UGUGCa -3'
miRNA:   3'- -CGUUAaCGC----UGCGCGGcuauuGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.