miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 40254 0.67 0.990345
Target:  5'- uGCAuuggccgUGUGGCGCGCa---AACGUGUu -3'
miRNA:   3'- -CGUua-----ACGCUGCGCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 15856 0.66 0.994554
Target:  5'- aGCAAguuaaaCGACagugcCGCCGGUcACGUGCc -3'
miRNA:   3'- -CGUUaac---GCUGc----GCGGCUAuUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 122535 0.66 0.996015
Target:  5'- cGCuaagGCGGCGgGCgug-GGCGUGCu -3'
miRNA:   3'- -CGuuaaCGCUGCgCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 129007 0.66 0.997138
Target:  5'- aCAAUUGUGcaACGCGCUaaAUGACcUGCa -3'
miRNA:   3'- cGUUAACGC--UGCGCGGc-UAUUGcACG- -5'
22911 3' -49.8 NC_005137.2 + 51285 0.68 0.981904
Target:  5'- cGCAAuUUGCGGCGgGCagCGGcaUAACGagUGCg -3'
miRNA:   3'- -CGUU-AACGCUGCgCG--GCU--AUUGC--ACG- -5'
22911 3' -49.8 NC_005137.2 + 26308 0.68 0.98577
Target:  5'- aCAAcgGCGGCGCGCUGGacucUAacACGcGCg -3'
miRNA:   3'- cGUUaaCGCUGCGCGGCU----AU--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 102745 0.66 0.994554
Target:  5'- aGCAcgUa-GACGaCG-CGGUGGCGUGCg -3'
miRNA:   3'- -CGUuaAcgCUGC-GCgGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 44007 0.66 0.997138
Target:  5'- cGCGAUccGCGGCGUuUCGc--ACGUGCa -3'
miRNA:   3'- -CGUUAa-CGCUGCGcGGCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 97074 0.68 0.987288
Target:  5'- aUAcgUGCG-CGCGaaugccggcaaacCCGAcAACGUGCg -3'
miRNA:   3'- cGUuaACGCuGCGC-------------GGCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 74281 0.66 0.997138
Target:  5'- uGCAAccGUGcCGUGCCGGcGcgaaagccaacACGUGCa -3'
miRNA:   3'- -CGUUaaCGCuGCGCGGCUaU-----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 67932 0.66 0.994554
Target:  5'- aGCAAga-CGACGUGuuGGUGAgCG-GCg -3'
miRNA:   3'- -CGUUaacGCUGCGCggCUAUU-GCaCG- -5'
22911 3' -49.8 NC_005137.2 + 98397 0.67 0.988971
Target:  5'- cCGAUUGUGAauaggUGUGCCGGUGA--UGCa -3'
miRNA:   3'- cGUUAACGCU-----GCGCGGCUAUUgcACG- -5'
22911 3' -49.8 NC_005137.2 + 56889 0.66 0.995331
Target:  5'- cCAAUUGCGuuuCGCGCaUGAUAAgagGCg -3'
miRNA:   3'- cGUUAACGCu--GCGCG-GCUAUUgcaCG- -5'
22911 3' -49.8 NC_005137.2 + 46881 0.66 0.99595
Target:  5'- gGCuggugGUGGCGCGCguggaaacgguguCGAUGuccguugcgcGCGUGCg -3'
miRNA:   3'- -CGuuaa-CGCUGCGCG-------------GCUAU----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 26795 0.66 0.996015
Target:  5'- cGCGc-UGCGACGCGCaCGcuuguACGaGCg -3'
miRNA:   3'- -CGUuaACGCUGCGCG-GCuau--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 81424 0.66 0.997089
Target:  5'- aGCu-UUGauGCGCaGCCcagcacuGAUAACGUGCa -3'
miRNA:   3'- -CGuuAACgcUGCG-CGG-------CUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 15259 0.69 0.977298
Target:  5'- -----cGCGGCGCGCaCGuu-GCGUuGCa -3'
miRNA:   3'- cguuaaCGCUGCGCG-GCuauUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 30974 0.68 0.981904
Target:  5'- -----cGCGcCGCGUCGGaccGCGUGCu -3'
miRNA:   3'- cguuaaCGCuGCGCGGCUau-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56291 0.68 0.981904
Target:  5'- ----cUGCGAaGUGCCGcugGACGUGUu -3'
miRNA:   3'- cguuaACGCUgCGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 8247 0.68 0.98577
Target:  5'- cGCGAUUGCuaaccacuacACcCGCCGGguucacUAACGUGCu -3'
miRNA:   3'- -CGUUAACGc---------UGcGCGGCU------AUUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.