miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 104986 0.71 0.930738
Target:  5'- uGCAA-UGCGGCGUGU---UAAUGUGCa -3'
miRNA:   3'- -CGUUaACGCUGCGCGgcuAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 40254 0.67 0.990345
Target:  5'- uGCAuuggccgUGUGGCGCGCa---AACGUGUu -3'
miRNA:   3'- -CGUua-----ACGCUGCGCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 128975 0.68 0.987449
Target:  5'- aGCAAauaaggcGCGACcuaaauagucuGCGCCGc-AGCGUGCa -3'
miRNA:   3'- -CGUUaa-----CGCUG-----------CGCGGCuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 97074 0.68 0.987288
Target:  5'- aUAcgUGCG-CGCGaaugccggcaaacCCGAcAACGUGCg -3'
miRNA:   3'- cGUuaACGCuGCGC-------------GGCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 26308 0.68 0.98577
Target:  5'- aCAAcgGCGGCGCGCUGGacucUAacACGcGCg -3'
miRNA:   3'- cGUUaaCGCUGCGCGGCU----AU--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 42777 0.68 0.983925
Target:  5'- --cGUUGCGaggcaGCGUGCCGAUAAacaUGCc -3'
miRNA:   3'- cguUAACGC-----UGCGCGGCUAUUgc-ACG- -5'
22911 3' -49.8 NC_005137.2 + 56291 0.68 0.981904
Target:  5'- ----cUGCGAaGUGCCGcugGACGUGUu -3'
miRNA:   3'- cguuaACGCUgCGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 104645 0.72 0.886727
Target:  5'- cGCuggcUGCGuuuuGCGUGCCGGUAGCGUa- -3'
miRNA:   3'- -CGuua-ACGC----UGCGCGGCUAUUGCAcg -5'
22911 3' -49.8 NC_005137.2 + 34366 0.72 0.900583
Target:  5'- gGCAAUgugucaaaggUGCGucaGCGCCGAU--UGUGCu -3'
miRNA:   3'- -CGUUA----------ACGCug-CGCGGCUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 31079 0.71 0.940976
Target:  5'- uGCG--UGCG-CGuCGCCGAUGauGCGUGg -3'
miRNA:   3'- -CGUuaACGCuGC-GCGGCUAU--UGCACg -5'
22911 3' -49.8 NC_005137.2 + 95602 0.69 0.96885
Target:  5'- -uGAUggGCG-CGCGCCGAUuccaaauGCGUcGCg -3'
miRNA:   3'- cgUUAa-CGCuGCGCGGCUAu------UGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 111530 0.7 0.962103
Target:  5'- aGCGGcUUGUGAUGUuuuuGCCGAgcuuuuGCGUGUg -3'
miRNA:   3'- -CGUU-AACGCUGCG----CGGCUau----UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 91234 0.7 0.949744
Target:  5'- aGCAGUgUGCcACGUGCCGggGAauaugacggacguCGUGCa -3'
miRNA:   3'- -CGUUA-ACGcUGCGCGGCuaUU-------------GCACG- -5'
22911 3' -49.8 NC_005137.2 + 5241 0.68 0.981904
Target:  5'- -aAAUUGCcACGCGCCGcucgaAACGcGCg -3'
miRNA:   3'- cgUUAACGcUGCGCGGCua---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 110630 0.66 0.996615
Target:  5'- gGCcg-UGCacaaACGCGCCGAcGGCGUuugGCu -3'
miRNA:   3'- -CGuuaACGc---UGCGCGGCUaUUGCA---CG- -5'
22911 3' -49.8 NC_005137.2 + 22405 0.66 0.997138
Target:  5'- gGCAAca-UGGCGCGCC--UGACGcUGCg -3'
miRNA:   3'- -CGUUaacGCUGCGCGGcuAUUGC-ACG- -5'
22911 3' -49.8 NC_005137.2 + 110572 0.66 0.997138
Target:  5'- cGCAccUGCGucuugGCGCGCCcAUccUGUGCg -3'
miRNA:   3'- -CGUuaACGC-----UGCGCGGcUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 24270 0.66 0.997138
Target:  5'- uGCAaaAUUGCacuguaacgaacGGCGCGCUGAcaGACG-GCu -3'
miRNA:   3'- -CGU--UAACG------------CUGCGCGGCUa-UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 90688 0.68 0.980603
Target:  5'- -----cGCGACGCcgacuuuuauuauccGCUGGUGguGCGUGCc -3'
miRNA:   3'- cguuaaCGCUGCG---------------CGGCUAU--UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 100081 0.71 0.930738
Target:  5'- -----cGCGGCGCGCgGc--ACGUGCu -3'
miRNA:   3'- cguuaaCGCUGCGCGgCuauUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.