miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22916 5' -53.6 NC_005137.2 + 100189 0.66 0.949534
Target:  5'- cGCGCGCCGcgUcggaccGCGUGCuuGcGCAc -3'
miRNA:   3'- aCGUGCGGCuaAu-----UGUACGggCcUGU- -5'
22916 5' -53.6 NC_005137.2 + 64157 0.66 0.945083
Target:  5'- cGCAC-CCGugcgcguUUAACG-GCgCCGGACAc -3'
miRNA:   3'- aCGUGcGGCu------AAUUGUaCG-GGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 61415 0.66 0.945083
Target:  5'- --aACGCCGcgUucucaAACAUGUCgGGACGu -3'
miRNA:   3'- acgUGCGGCuaA-----UUGUACGGgCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 114239 0.66 0.940382
Target:  5'- uUGCACGCCGu---GCAauagCCGGACu -3'
miRNA:   3'- -ACGUGCGGCuaauUGUacg-GGCCUGu -5'
22916 5' -53.6 NC_005137.2 + 74870 0.66 0.930222
Target:  5'- cUGCGaagUGCCGcugGACGUGUUgGGACAa -3'
miRNA:   3'- -ACGU---GCGGCuaaUUGUACGGgCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 7623 0.67 0.92476
Target:  5'- aUGCAuuucagaguuuCGCCGGccAGCGUGCCCaGAUu -3'
miRNA:   3'- -ACGU-----------GCGGCUaaUUGUACGGGcCUGu -5'
22916 5' -53.6 NC_005137.2 + 75232 0.67 0.92476
Target:  5'- cUGCugGCCGAaaugaUGGcCGUGaCCgCGGGCGc -3'
miRNA:   3'- -ACGugCGGCUa----AUU-GUAC-GG-GCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 7476 0.67 0.919044
Target:  5'- gGgGCGCCagcacuUUGACcgcauccUGCCCGGGCAa -3'
miRNA:   3'- aCgUGCGGcu----AAUUGu------ACGGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 29515 0.67 0.913074
Target:  5'- aGCACGCCaGUUuuuguGgGUGCgCCGcGACAa -3'
miRNA:   3'- aCGUGCGGcUAAu----UgUACG-GGC-CUGU- -5'
22916 5' -53.6 NC_005137.2 + 95754 0.67 0.906851
Target:  5'- aGCACGUCGcgcacaGUGCgCGGGCGg -3'
miRNA:   3'- aCGUGCGGCuaauugUACGgGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 110727 0.67 0.900379
Target:  5'- gUGCGCGCaGAgcgcuUGUGCgCCGGGCGa -3'
miRNA:   3'- -ACGUGCGgCUaauu-GUACG-GGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 31158 0.68 0.893658
Target:  5'- aGCgGCGCCGAccAGCGUGCgCGGuuGg -3'
miRNA:   3'- aCG-UGCGGCUaaUUGUACGgGCCugU- -5'
22916 5' -53.6 NC_005137.2 + 99596 0.68 0.879491
Target:  5'- aGCcCGCCGGU----GUGCCUGGugGc -3'
miRNA:   3'- aCGuGCGGCUAauugUACGGGCCugU- -5'
22916 5' -53.6 NC_005137.2 + 56669 0.68 0.872053
Target:  5'- gUGCuuGCCGAcggcgcugugGACGUGaCCGGACGc -3'
miRNA:   3'- -ACGugCGGCUaa--------UUGUACgGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 115289 0.68 0.872053
Target:  5'- gUGC-CGCCGGUc-ACGUGCCgcccgaauuUGGACAc -3'
miRNA:   3'- -ACGuGCGGCUAauUGUACGG---------GCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 76658 0.68 0.864386
Target:  5'- gUGCACGCCGuugAAUAgacGCCCGuGuCAu -3'
miRNA:   3'- -ACGUGCGGCuaaUUGUa--CGGGC-CuGU- -5'
22916 5' -53.6 NC_005137.2 + 95776 0.68 0.862042
Target:  5'- cGCACGUCGG--GACGUuugauuagccacacGaCCCGGACGg -3'
miRNA:   3'- aCGUGCGGCUaaUUGUA--------------C-GGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 96663 0.69 0.856496
Target:  5'- uUGCGCGCCGcuaguCAUagcGCCCguGGACAc -3'
miRNA:   3'- -ACGUGCGGCuaauuGUA---CGGG--CCUGU- -5'
22916 5' -53.6 NC_005137.2 + 97373 0.69 0.843426
Target:  5'- aGCAUGCUGcgcGACAUGCuguacgacgacagcaCCGGGCAg -3'
miRNA:   3'- aCGUGCGGCuaaUUGUACG---------------GGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 52020 0.69 0.840075
Target:  5'- uUGuCGCGCCGGgcgUAaaagGCGUGCacaUGGACAa -3'
miRNA:   3'- -AC-GUGCGGCUa--AU----UGUACGg--GCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.