miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 3' -46.3 NC_005137.2 + 7661 1.14 0.010902
Target:  5'- aGUAUCAAAUUGCACCGAAGGCAACGCu -3'
miRNA:   3'- -CAUAGUUUAACGUGGCUUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 95137 0.82 0.586524
Target:  5'- -gGUgAGAUUGuCAUUGAGGGCAACGCg -3'
miRNA:   3'- caUAgUUUAAC-GUGGCUUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 106444 0.76 0.895352
Target:  5'- uUAUCAGAcauugGCGCCGuGGGGCAuCGCg -3'
miRNA:   3'- cAUAGUUUaa---CGUGGC-UUCCGUuGCG- -5'
22917 3' -46.3 NC_005137.2 + 11627 0.74 0.943617
Target:  5'- ----uGGAUaGCACCGAGcucGGCGGCGCg -3'
miRNA:   3'- cauagUUUAaCGUGGCUU---CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 28633 0.74 0.943617
Target:  5'- cGUGUCA--UUGCACCaaaacGAccGCAACGCg -3'
miRNA:   3'- -CAUAGUuuAACGUGG-----CUucCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 7855 0.74 0.95288
Target:  5'- -aAUCAGucaUGCGCCGcAGGCAuuACGUg -3'
miRNA:   3'- caUAGUUua-ACGUGGCuUCCGU--UGCG- -5'
22917 3' -46.3 NC_005137.2 + 64808 0.74 0.95288
Target:  5'- ---aCAug-UGCACCGAaucGGGCGACGg -3'
miRNA:   3'- cauaGUuuaACGUGGCU---UCCGUUGCg -5'
22917 3' -46.3 NC_005137.2 + 86391 0.73 0.957103
Target:  5'- uGUAagCAAAguggGUGCCGAGGGCA-CGCu -3'
miRNA:   3'- -CAUa-GUUUaa--CGUGGCUUCCGUuGCG- -5'
22917 3' -46.3 NC_005137.2 + 28951 0.73 0.964756
Target:  5'- --uUCGAuagacgugUGCGCCGAGGGC-GCGUu -3'
miRNA:   3'- cauAGUUua------ACGUGGCUUCCGuUGCG- -5'
22917 3' -46.3 NC_005137.2 + 96971 0.72 0.977088
Target:  5'- --cUCAAAUUGCGCCaacaaguAGGCucgauGACGCa -3'
miRNA:   3'- cauAGUUUAACGUGGcu-----UCCG-----UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 72067 0.72 0.979598
Target:  5'- -gGUCGAcUUGCACCGAAucgcuGCucuGCGCg -3'
miRNA:   3'- caUAGUUuAACGUGGCUUc----CGu--UGCG- -5'
22917 3' -46.3 NC_005137.2 + 99507 0.71 0.983998
Target:  5'- uUGUCAAAUUGCGgCu--GGCcGCGCa -3'
miRNA:   3'- cAUAGUUUAACGUgGcuuCCGuUGCG- -5'
22917 3' -46.3 NC_005137.2 + 2520 0.71 0.985907
Target:  5'- ---aCGGAUUGUGCCGucGGguACGUa -3'
miRNA:   3'- cauaGUUUAACGUGGCuuCCguUGCG- -5'
22917 3' -46.3 NC_005137.2 + 75319 0.71 0.987638
Target:  5'- -aAUUAAAgUGCG-CGAGGGCAugGUa -3'
miRNA:   3'- caUAGUUUaACGUgGCUUCCGUugCG- -5'
22917 3' -46.3 NC_005137.2 + 96022 0.71 0.989199
Target:  5'- cGUGUCGGcggUGUGCCGAuuaaacacGGGCAACa- -3'
miRNA:   3'- -CAUAGUUua-ACGUGGCU--------UCCGUUGcg -5'
22917 3' -46.3 NC_005137.2 + 87953 0.71 0.990602
Target:  5'- ---aCAAAUUGacuuaacugguCGCCGuccguGGGCGACGCg -3'
miRNA:   3'- cauaGUUUAAC-----------GUGGCu----UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 34850 0.71 0.990602
Target:  5'- -gAUgGGAUgGUACCGcacggcGGGCAACGCg -3'
miRNA:   3'- caUAgUUUAaCGUGGCu-----UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 107117 0.7 0.991739
Target:  5'- uUGUCAAuUUGUuccugcaGCUGAgcggacuggucAGGCAACGCg -3'
miRNA:   3'- cAUAGUUuAACG-------UGGCU-----------UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 27673 0.7 0.991858
Target:  5'- -gGUCAug-UGCGCgGAAGcuaacccacccuGCAACGCa -3'
miRNA:   3'- caUAGUuuaACGUGgCUUC------------CGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 48749 0.7 0.991858
Target:  5'- -------cUUGuCGCCGAacaAGGCGGCGCg -3'
miRNA:   3'- cauaguuuAAC-GUGGCU---UCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.