miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 3' -46.3 NC_005137.2 + 1101 0.69 0.99778
Target:  5'- ---cCuuAUUGCGCCGAugacGGGCGcuggucuACGCu -3'
miRNA:   3'- cauaGuuUAACGUGGCU----UCCGU-------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 2520 0.71 0.985907
Target:  5'- ---aCGGAUUGUGCCGucGGguACGUa -3'
miRNA:   3'- cauaGUUUAACGUGGCuuCCguUGCG- -5'
22917 3' -46.3 NC_005137.2 + 4387 0.68 0.998195
Target:  5'- cGUGUCGccgaccgacgcAAUUGCACguuuUGAA-GCAGCGCg -3'
miRNA:   3'- -CAUAGU-----------UUAACGUG----GCUUcCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 7661 1.14 0.010902
Target:  5'- aGUAUCAAAUUGCACCGAAGGCAACGCu -3'
miRNA:   3'- -CAUAGUUUAACGUGGCUUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 7855 0.74 0.95288
Target:  5'- -aAUCAGucaUGCGCCGcAGGCAuuACGUg -3'
miRNA:   3'- caUAGUUua-ACGUGGCuUCCGU--UGCG- -5'
22917 3' -46.3 NC_005137.2 + 11627 0.74 0.943617
Target:  5'- ----uGGAUaGCACCGAGcucGGCGGCGCg -3'
miRNA:   3'- cauagUUUAaCGUGGCUU---CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 13005 0.69 0.995897
Target:  5'- ---cCAGAUUGCGCCGGGcuacGGCcuggccgaaaacuuuGACGCc -3'
miRNA:   3'- cauaGUUUAACGUGGCUU----CCG---------------UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 27472 0.66 0.999887
Target:  5'- cGUcgCGAcgUGCGCCGccAGuCAAUGCu -3'
miRNA:   3'- -CAuaGUUuaACGUGGCu-UCcGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 27673 0.7 0.991858
Target:  5'- -gGUCAug-UGCGCgGAAGcuaacccacccuGCAACGCa -3'
miRNA:   3'- caUAGUuuaACGUGgCUUC------------CGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 28633 0.74 0.943617
Target:  5'- cGUGUCA--UUGCACCaaaacGAccGCAACGCg -3'
miRNA:   3'- -CAUAGUuuAACGUGG-----CUucCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 28951 0.73 0.964756
Target:  5'- --uUCGAuagacgugUGCGCCGAGGGC-GCGUu -3'
miRNA:   3'- cauAGUUua------ACGUGGCUUCCGuUGCG- -5'
22917 3' -46.3 NC_005137.2 + 31375 0.66 0.99975
Target:  5'- --uUCAAGcuggUGUGCgCGAccgcugguacaaGGGCGACGCg -3'
miRNA:   3'- cauAGUUUa---ACGUG-GCU------------UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 32512 0.68 0.998783
Target:  5'- -cAUCGGGUUGUGCUGGaugAGGCucACGUc -3'
miRNA:   3'- caUAGUUUAACGUGGCU---UCCGu-UGCG- -5'
22917 3' -46.3 NC_005137.2 + 33121 0.66 0.999887
Target:  5'- -gGUCA----GCGCCGGGuGGCAgcacauuugGCGCa -3'
miRNA:   3'- caUAGUuuaaCGUGGCUU-CCGU---------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 34600 0.68 0.998513
Target:  5'- uGUAUCAAA--GCACCGAAuuGGCgGACa- -3'
miRNA:   3'- -CAUAGUUUaaCGUGGCUU--CCG-UUGcg -5'
22917 3' -46.3 NC_005137.2 + 34850 0.71 0.990602
Target:  5'- -gAUgGGAUgGUACCGcacggcGGGCAACGCg -3'
miRNA:   3'- caUAgUUUAaCGUGGCu-----UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 35122 0.67 0.999487
Target:  5'- -gGUCAA----CACCGAAGGUuugacACGCg -3'
miRNA:   3'- caUAGUUuaacGUGGCUUCCGu----UGCG- -5'
22917 3' -46.3 NC_005137.2 + 35559 0.67 0.999357
Target:  5'- uUGUCAAGacacGCACCGccGGCGccauuuugauaaACGCu -3'
miRNA:   3'- cAUAGUUUaa--CGUGGCuuCCGU------------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 35724 0.7 0.994763
Target:  5'- uUAUCAAAaugGCGCCGgcGGUgcgugucuugacaAGCGCc -3'
miRNA:   3'- cAUAGUUUaa-CGUGGCuuCCG-------------UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 38079 0.66 0.999807
Target:  5'- aGUGUCAcuGAccGcCACgGAcaagcccacGGGCAACGCg -3'
miRNA:   3'- -CAUAGU--UUaaC-GUGgCU---------UCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.