miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 3' -46.3 NC_005137.2 + 35559 0.67 0.999357
Target:  5'- uUGUCAAGacacGCACCGccGGCGccauuuugauaaACGCu -3'
miRNA:   3'- cAUAGUUUaa--CGUGGCuuCCGU------------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 130304 0.69 0.997384
Target:  5'- aUGUCAGAgccGCgcaaaggcgcuACCGAucGCAGCGCg -3'
miRNA:   3'- cAUAGUUUaa-CG-----------UGGCUucCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 96396 0.68 0.998392
Target:  5'- aUAUgGAGccGCGCCGAccgcuacccgcgcGGCGACGCg -3'
miRNA:   3'- cAUAgUUUaaCGUGGCUu------------CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 34600 0.68 0.998513
Target:  5'- uGUAUCAAA--GCACCGAAuuGGCgGACa- -3'
miRNA:   3'- -CAUAGUUUaaCGUGGCUU--CCG-UUGcg -5'
22917 3' -46.3 NC_005137.2 + 68471 0.68 0.998513
Target:  5'- -cGUCGAccGUUGCgacaacacGCCGggGGauacaAGCGCc -3'
miRNA:   3'- caUAGUU--UAACG--------UGGCuuCCg----UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 32512 0.68 0.998783
Target:  5'- -cAUCGGGUUGUGCUGGaugAGGCucACGUc -3'
miRNA:   3'- caUAGUUUAACGUGGCU---UCCGu-UGCG- -5'
22917 3' -46.3 NC_005137.2 + 95484 0.68 0.998783
Target:  5'- -gGUCGGAUgcGCGCCGcacGGGCGcauCGCu -3'
miRNA:   3'- caUAGUUUAa-CGUGGCu--UCCGUu--GCG- -5'
22917 3' -46.3 NC_005137.2 + 71363 0.68 0.99901
Target:  5'- -cGUCGGccgcGUUG-ACUGucGGCGACGCg -3'
miRNA:   3'- caUAGUU----UAACgUGGCuuCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 46647 0.68 0.9992
Target:  5'- ---aCAGcg-GCGCUaAGGGCAGCGCc -3'
miRNA:   3'- cauaGUUuaaCGUGGcUUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 95647 0.69 0.995616
Target:  5'- cGUG-CGccgUGCGCCGAcGGGCAaguGCGCc -3'
miRNA:   3'- -CAUaGUuuaACGUGGCU-UCCGU---UGCG- -5'
22917 3' -46.3 NC_005137.2 + 102249 0.7 0.991858
Target:  5'- -aGUCAAugaccggUGUGCC--AGGCGACGCg -3'
miRNA:   3'- caUAGUUua-----ACGUGGcuUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 51235 0.7 0.991858
Target:  5'- gGUGUUGGAcUGCAaaGggGGCAaaucguagcgGCGCa -3'
miRNA:   3'- -CAUAGUUUaACGUggCuuCCGU----------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 95137 0.82 0.586524
Target:  5'- -gGUgAGAUUGuCAUUGAGGGCAACGCg -3'
miRNA:   3'- caUAgUUUAAC-GUGGCUUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 11627 0.74 0.943617
Target:  5'- ----uGGAUaGCACCGAGcucGGCGGCGCg -3'
miRNA:   3'- cauagUUUAaCGUGGCUU---CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 64808 0.74 0.95288
Target:  5'- ---aCAug-UGCACCGAaucGGGCGACGg -3'
miRNA:   3'- cauaGUuuaACGUGGCU---UCCGUUGCg -5'
22917 3' -46.3 NC_005137.2 + 96971 0.72 0.977088
Target:  5'- --cUCAAAUUGCGCCaacaaguAGGCucgauGACGCa -3'
miRNA:   3'- cauAGUUUAACGUGGcu-----UCCG-----UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 99507 0.71 0.983998
Target:  5'- uUGUCAAAUUGCGgCu--GGCcGCGCa -3'
miRNA:   3'- cAUAGUUUAACGUgGcuuCCGuUGCG- -5'
22917 3' -46.3 NC_005137.2 + 34850 0.71 0.990602
Target:  5'- -gAUgGGAUgGUACCGcacggcGGGCAACGCg -3'
miRNA:   3'- caUAgUUUAaCGUGGCu-----UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 87953 0.71 0.990602
Target:  5'- ---aCAAAUUGacuuaacugguCGCCGuccguGGGCGACGCg -3'
miRNA:   3'- cauaGUUUAAC-----------GUGGCu----UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 48749 0.7 0.991858
Target:  5'- -------cUUGuCGCCGAacaAGGCGGCGCg -3'
miRNA:   3'- cauaguuuAAC-GUGGCU---UCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.