miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22919 3' -52.1 NC_005137.2 + 30484 0.82 0.274332
Target:  5'- uGaGGCGGCGCGUCGACAGcUCAAGCg -3'
miRNA:   3'- gCcUUGCCGCGCGGUUGUCaAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 84055 0.66 0.980855
Target:  5'- aCGGAAUaGUGUcaaaGCCAGCGGUUUGuAACa -3'
miRNA:   3'- -GCCUUGcCGCG----CGGUUGUCAAGU-UUG- -5'
22919 3' -52.1 NC_005137.2 + 70118 0.66 0.980855
Target:  5'- cCGGAAaguacaugGGCuCGcCCAACGGUUCGGGa -3'
miRNA:   3'- -GCCUUg-------CCGcGC-GGUUGUCAAGUUUg -5'
22919 3' -52.1 NC_005137.2 + 100267 0.66 0.97711
Target:  5'- aCGGGcgcgcgucGCGGCauucaCGCCcacaaucuccacauGCAGUUCAAACg -3'
miRNA:   3'- -GCCU--------UGCCGc----GCGGu-------------UGUCAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 100039 0.66 0.976095
Target:  5'- gCGGuccgacGCGGCGCGC-GGCGcGUUCAGc- -3'
miRNA:   3'- -GCCu-----UGCCGCGCGgUUGU-CAAGUUug -5'
22919 3' -52.1 NC_005137.2 + 110700 0.66 0.973415
Target:  5'- uCGGGucauGCGcGCGUGCgCAACGGUgugCGcGCa -3'
miRNA:   3'- -GCCU----UGC-CGCGCG-GUUGUCAa--GUuUG- -5'
22919 3' -52.1 NC_005137.2 + 63002 0.66 0.973415
Target:  5'- gCGGAcccAUGGUgcgGCGCCGGCGuGUcggCAAGCu -3'
miRNA:   3'- -GCCU---UGCCG---CGCGGUUGU-CAa--GUUUG- -5'
22919 3' -52.1 NC_005137.2 + 18484 0.66 0.970523
Target:  5'- ---cGCGGCuGUGCCGACgucaAGUUUAAGCc -3'
miRNA:   3'- gccuUGCCG-CGCGGUUG----UCAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 69268 0.66 0.970222
Target:  5'- uGG-ACGGCGUGCgcggucgCGGCGcGUUUAGGCg -3'
miRNA:   3'- gCCuUGCCGCGCG-------GUUGU-CAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 125048 0.66 0.967412
Target:  5'- aCGGAgccggGCGGCGCGgCGcCGGaUCuGAACg -3'
miRNA:   3'- -GCCU-----UGCCGCGCgGUuGUCaAG-UUUG- -5'
22919 3' -52.1 NC_005137.2 + 31617 0.67 0.964076
Target:  5'- uGGAuuuuAUGGCG-GCCAACGGU-CAGuGCa -3'
miRNA:   3'- gCCU----UGCCGCgCGGUUGUCAaGUU-UG- -5'
22919 3' -52.1 NC_005137.2 + 5085 0.67 0.956703
Target:  5'- uGaGACGGCGCGUCGacuuaACAGaggCGAGCu -3'
miRNA:   3'- gCcUUGCCGCGCGGU-----UGUCaa-GUUUG- -5'
22919 3' -52.1 NC_005137.2 + 119685 0.67 0.952655
Target:  5'- aGGcACGGCGCGCgCAcACAGcUUAGcACg -3'
miRNA:   3'- gCCuUGCCGCGCG-GU-UGUCaAGUU-UG- -5'
22919 3' -52.1 NC_005137.2 + 93464 0.68 0.939016
Target:  5'- aCGGGcACGGUgcGCGCCAGCGccGUUUgccgAAACa -3'
miRNA:   3'- -GCCU-UGCCG--CGCGGUUGU--CAAG----UUUG- -5'
22919 3' -52.1 NC_005137.2 + 12808 0.68 0.933962
Target:  5'- cCGGGugGcGUcccacaGCGCCAACGGcgUCAAAg -3'
miRNA:   3'- -GCCUugC-CG------CGCGGUUGUCa-AGUUUg -5'
22919 3' -52.1 NC_005137.2 + 8 0.68 0.939016
Target:  5'- gCGGGgccagugaacaGCGGCGCGUCA--GGcgCAAACu -3'
miRNA:   3'- -GCCU-----------UGCCGCGCGGUugUCaaGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 12702 1.1 0.004999
Target:  5'- uCGGAACGGCGCGCCAACAGUUCAAACu -3'
miRNA:   3'- -GCCUUGCCGCGCGGUUGUCAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 79619 0.74 0.670476
Target:  5'- uGGAGCGGcCGCGCUAGCAa--CAGAUg -3'
miRNA:   3'- gCCUUGCC-GCGCGGUUGUcaaGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 24288 0.73 0.712359
Target:  5'- -cGAACGGCGCGCUGACAGa------ -3'
miRNA:   3'- gcCUUGCCGCGCGGUUGUCaaguuug -5'
22919 3' -52.1 NC_005137.2 + 88055 0.73 0.743035
Target:  5'- uGGGACGGCGUGgCCAu--GUUCuuACa -3'
miRNA:   3'- gCCUUGCCGCGC-GGUuguCAAGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.