miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22919 3' -52.1 NC_005137.2 + 110729 0.85 0.187735
Target:  5'- aGGAugGGCGCGCCAagacGCAGgugCGGGCg -3'
miRNA:   3'- gCCUugCCGCGCGGU----UGUCaa-GUUUG- -5'
22919 3' -52.1 NC_005137.2 + 21120 0.66 0.978573
Target:  5'- gCGGcaaAAC-GCGCGCCG-CAGgcagCAGACg -3'
miRNA:   3'- -GCC---UUGcCGCGCGGUuGUCaa--GUUUG- -5'
22919 3' -52.1 NC_005137.2 + 18405 0.66 0.978573
Target:  5'- aCGGAcGCGGCGC-C--GCAG-UCGAACg -3'
miRNA:   3'- -GCCU-UGCCGCGcGguUGUCaAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 22618 0.66 0.978573
Target:  5'- gCGuGAgcGCGGUGCaGCCGACGGagCGcACg -3'
miRNA:   3'- -GC-CU--UGCCGCG-CGGUUGUCaaGUuUG- -5'
22919 3' -52.1 NC_005137.2 + 7352 0.66 0.976095
Target:  5'- uGGAagACGGCacGCGCC---GGUUCGAAa -3'
miRNA:   3'- gCCU--UGCCG--CGCGGuugUCAAGUUUg -5'
22919 3' -52.1 NC_005137.2 + 54891 0.66 0.967412
Target:  5'- gCGGu-UGuGCGCGCCAACGaUUCGuACa -3'
miRNA:   3'- -GCCuuGC-CGCGCGGUUGUcAAGUuUG- -5'
22919 3' -52.1 NC_005137.2 + 41965 0.67 0.964076
Target:  5'- -cGcgUGGCGCGCCGugACAGcgUCAGAa -3'
miRNA:   3'- gcCuuGCCGCGCGGU--UGUCa-AGUUUg -5'
22919 3' -52.1 NC_005137.2 + 41612 0.67 0.964076
Target:  5'- gCGGAcaGCGcGUGCGCCAu--GUUUAAAa -3'
miRNA:   3'- -GCCU--UGC-CGCGCGGUuguCAAGUUUg -5'
22919 3' -52.1 NC_005137.2 + 131035 0.67 0.960139
Target:  5'- ---uGCGGCGCGUCcGCGGcguacaaUUCAGGCg -3'
miRNA:   3'- gccuUGCCGCGCGGuUGUC-------AAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 15412 0.68 0.923082
Target:  5'- aCGG-GCGGUGCGUUuu--GUUCGAACg -3'
miRNA:   3'- -GCCuUGCCGCGCGGuuguCAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 99704 0.69 0.898244
Target:  5'- uCGGAacaaGCGaGCGCGCUGACGcagUUAAACg -3'
miRNA:   3'- -GCCU----UGC-CGCGCGGUUGUca-AGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 74429 0.72 0.782424
Target:  5'- aGGcAACuGCGCGCCuuguCAGUUgCAAACa -3'
miRNA:   3'- gCC-UUGcCGCGCGGuu--GUCAA-GUUUG- -5'
22919 3' -52.1 NC_005137.2 + 72496 0.77 0.493095
Target:  5'- gCGGAGCGGCGCaGCUcGCGcaauucgcGUUCGGACa -3'
miRNA:   3'- -GCCUUGCCGCG-CGGuUGU--------CAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 18484 0.66 0.970523
Target:  5'- ---cGCGGCuGUGCCGACgucaAGUUUAAGCc -3'
miRNA:   3'- gccuUGCCG-CGCGGUUG----UCAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 84055 0.66 0.980855
Target:  5'- aCGGAAUaGUGUcaaaGCCAGCGGUUUGuAACa -3'
miRNA:   3'- -GCCUUGcCGCG----CGGUUGUCAAGU-UUG- -5'
22919 3' -52.1 NC_005137.2 + 70118 0.66 0.980855
Target:  5'- cCGGAAaguacaugGGCuCGcCCAACGGUUCGGGa -3'
miRNA:   3'- -GCCUUg-------CCGcGC-GGUUGUCAAGUUUg -5'
22919 3' -52.1 NC_005137.2 + 100267 0.66 0.97711
Target:  5'- aCGGGcgcgcgucGCGGCauucaCGCCcacaaucuccacauGCAGUUCAAACg -3'
miRNA:   3'- -GCCU--------UGCCGc----GCGGu-------------UGUCAAGUUUG- -5'
22919 3' -52.1 NC_005137.2 + 100039 0.66 0.976095
Target:  5'- gCGGuccgacGCGGCGCGC-GGCGcGUUCAGc- -3'
miRNA:   3'- -GCCu-----UGCCGCGCGgUUGU-CAAGUUug -5'
22919 3' -52.1 NC_005137.2 + 110700 0.66 0.973415
Target:  5'- uCGGGucauGCGcGCGUGCgCAACGGUgugCGcGCa -3'
miRNA:   3'- -GCCU----UGC-CGCGCG-GUUGUCAa--GUuUG- -5'
22919 3' -52.1 NC_005137.2 + 63002 0.66 0.973415
Target:  5'- gCGGAcccAUGGUgcgGCGCCGGCGuGUcggCAAGCu -3'
miRNA:   3'- -GCCU---UGCCG---CGCGGUUGU-CAa--GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.