miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22920 3' -54.3 NC_005137.2 + 16540 1.07 0.0046
Target:  5'- gACUACGCCGACACGCAUAACCCACCUc -3'
miRNA:   3'- -UGAUGCGGCUGUGCGUAUUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 25857 0.77 0.372143
Target:  5'- gACU-CGCCGACAcCGCGUcccAAUCCACCUu -3'
miRNA:   3'- -UGAuGCGGCUGU-GCGUA---UUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 68585 0.75 0.490357
Target:  5'- gGCUGCGCCGACuCGUucAACCCgugcGCCa -3'
miRNA:   3'- -UGAUGCGGCUGuGCGuaUUGGG----UGGa -5'
22920 3' -54.3 NC_005137.2 + 88200 0.74 0.540317
Target:  5'- gGCcACGCCGuccCACGUgGUGGCCCGCCUc -3'
miRNA:   3'- -UGaUGCGGCu--GUGCG-UAUUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 63169 0.72 0.623236
Target:  5'- aGCU-UGCCGACACGCcgGcGCCgCACCa -3'
miRNA:   3'- -UGAuGCGGCUGUGCGuaU-UGG-GUGGa -5'
22920 3' -54.3 NC_005137.2 + 78816 0.72 0.632666
Target:  5'- cGCUAUuaGCCGACACGCAUuugacacAACUCGCa- -3'
miRNA:   3'- -UGAUG--CGGCUGUGCGUA-------UUGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 96402 0.72 0.654658
Target:  5'- aGCcGCGCCGACcgcuacccGCGCGgcgacgcGCCCGCCg -3'
miRNA:   3'- -UGaUGCGGCUG--------UGCGUau-----UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 110853 0.71 0.685909
Target:  5'- gUUGCGCaCG-CGCGCAUGACCCGauaCUu -3'
miRNA:   3'- uGAUGCG-GCuGUGCGUAUUGGGUg--GA- -5'
22920 3' -54.3 NC_005137.2 + 108264 0.71 0.685909
Target:  5'- uGCUGCGaUCGGCGCGCAacGCgUACCa -3'
miRNA:   3'- -UGAUGC-GGCUGUGCGUauUGgGUGGa -5'
22920 3' -54.3 NC_005137.2 + 35026 0.71 0.696245
Target:  5'- -gUACGCCcAUGCGCAUcgcguuGCCCGCCg -3'
miRNA:   3'- ugAUGCGGcUGUGCGUAu-----UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 99766 0.7 0.743911
Target:  5'- uGCUugGCgCGGCGCGCGUuugcaacaaacuAacccuauguuuugaACCCACCg -3'
miRNA:   3'- -UGAugCG-GCUGUGCGUA------------U--------------UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 13263 0.7 0.766475
Target:  5'- gGCUAUagGCCGGCGUGgGUAGCaCCGCCa -3'
miRNA:   3'- -UGAUG--CGGCUGUGCgUAUUG-GGUGGa -5'
22920 3' -54.3 NC_005137.2 + 67703 0.7 0.776085
Target:  5'- ---cCGCuCGGCGCGCGUuuGugCCGCCUc -3'
miRNA:   3'- ugauGCG-GCUGUGCGUA--UugGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 81744 0.69 0.785561
Target:  5'- uACUGCuGCCGcguCACGCGUcaagauuuGACCCGCg- -3'
miRNA:   3'- -UGAUG-CGGCu--GUGCGUA--------UUGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 111538 0.69 0.785561
Target:  5'- aGCU--GCUGGCaaGCGCuUGACCCACCa -3'
miRNA:   3'- -UGAugCGGCUG--UGCGuAUUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 81800 0.69 0.793966
Target:  5'- uUUGCGUCGcGCGuCGCGUAucgauguGCCCACCg -3'
miRNA:   3'- uGAUGCGGC-UGU-GCGUAU-------UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 42132 0.69 0.794893
Target:  5'- cGCUGCGuUCGACGCGUGgaa-CCGCCg -3'
miRNA:   3'- -UGAUGC-GGCUGUGCGUauugGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 75461 0.69 0.80407
Target:  5'- aACUGCGCgaguuuucaaaCGAgACGCcguuGCCCGCCg -3'
miRNA:   3'- -UGAUGCG-----------GCUgUGCGuau-UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 122875 0.69 0.813084
Target:  5'- uGCUaagcACGCCcaGCACGCGUAACCUuggcaacgGCCg -3'
miRNA:   3'- -UGA----UGCGGc-UGUGCGUAUUGGG--------UGGa -5'
22920 3' -54.3 NC_005137.2 + 46607 0.69 0.821926
Target:  5'- --gACGUCGGCGUGCAUGugCCACa- -3'
miRNA:   3'- ugaUGCGGCUGUGCGUAUugGGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.