miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22920 3' -54.3 NC_005137.2 + 5273 0.66 0.92355
Target:  5'- ---uUGUCGGCGCGCGUcaucaaaagaaAGCUCGCCUc -3'
miRNA:   3'- ugauGCGGCUGUGCGUA-----------UUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 7847 0.66 0.93922
Target:  5'- -aUGCGCCG-CAgGCAUuacguGCCCAUg- -3'
miRNA:   3'- ugAUGCGGCuGUgCGUAu----UGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 13263 0.7 0.766475
Target:  5'- gGCUAUagGCCGGCGUGgGUAGCaCCGCCa -3'
miRNA:   3'- -UGAUG--CGGCUGUGCgUAUUG-GGUGGa -5'
22920 3' -54.3 NC_005137.2 + 16540 1.07 0.0046
Target:  5'- gACUACGCCGACACGCAUAACCCACCUc -3'
miRNA:   3'- -UGAUGCGGCUGUGCGUAUUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 20954 0.68 0.839058
Target:  5'- gACUGCGUcugcugccugCGGCGCGCGUuuuGCCgCGCUUg -3'
miRNA:   3'- -UGAUGCG----------GCUGUGCGUAu--UGG-GUGGA- -5'
22920 3' -54.3 NC_005137.2 + 25857 0.77 0.372143
Target:  5'- gACU-CGCCGACAcCGCGUcccAAUCCACCUu -3'
miRNA:   3'- -UGAuGCGGCUGU-GCGUA---UUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 28033 0.67 0.8855
Target:  5'- --gGCGCCGcCACGCGaucgccAACCCGCa- -3'
miRNA:   3'- ugaUGCGGCuGUGCGUa-----UUGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 33351 0.66 0.934247
Target:  5'- -gUGCGCucuuCGACGCGCAauUGACCCGu-- -3'
miRNA:   3'- ugAUGCG----GCUGUGCGU--AUUGGGUgga -5'
22920 3' -54.3 NC_005137.2 + 33939 0.67 0.911851
Target:  5'- uGCaACGuuGGCACaGCAcAACgCCGCCg -3'
miRNA:   3'- -UGaUGCggCUGUG-CGUaUUG-GGUGGa -5'
22920 3' -54.3 NC_005137.2 + 35026 0.71 0.696245
Target:  5'- -gUACGCCcAUGCGCAUcgcguuGCCCGCCg -3'
miRNA:   3'- ugAUGCGGcUGUGCGUAu-----UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 36681 0.68 0.847333
Target:  5'- aACgAUGCCGucguGCACGUGcgcgAACCCACCg -3'
miRNA:   3'- -UGaUGCGGC----UGUGCGUa---UUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 42132 0.69 0.794893
Target:  5'- cGCUGCGuUCGACGCGUGgaa-CCGCCg -3'
miRNA:   3'- -UGAUGC-GGCUGUGCGUauugGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 42471 0.68 0.870901
Target:  5'- aGCUACGCCaACuggGCGCugAACCCGCa- -3'
miRNA:   3'- -UGAUGCGGcUG---UGCGuaUUGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 46607 0.69 0.821926
Target:  5'- --gACGUCGGCGUGCAUGugCCACa- -3'
miRNA:   3'- ugaUGCGGCUGUGCGUAUugGGUGga -5'
22920 3' -54.3 NC_005137.2 + 48888 0.66 0.934247
Target:  5'- uACUGCGCCG-CGCuGCGgc-UUCGCCUg -3'
miRNA:   3'- -UGAUGCGGCuGUG-CGUauuGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 50267 0.67 0.882654
Target:  5'- gAUUAUGCCGAUAgcCGCGgucaguuuuucgcGGCCCACCc -3'
miRNA:   3'- -UGAUGCGGCUGU--GCGUa------------UUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 50627 0.66 0.92355
Target:  5'- --cACGCCGGCACGgGgcuGCagCACCUu -3'
miRNA:   3'- ugaUGCGGCUGUGCgUau-UGg-GUGGA- -5'
22920 3' -54.3 NC_005137.2 + 59946 0.66 0.929023
Target:  5'- aGCUggcGCGCCucguuGAUGCGCAU-GCCCguACCUa -3'
miRNA:   3'- -UGA---UGCGG-----CUGUGCGUAuUGGG--UGGA- -5'
22920 3' -54.3 NC_005137.2 + 61413 0.68 0.855403
Target:  5'- aACUgACGCCGACAauUAcUAAUCCGCCg -3'
miRNA:   3'- -UGA-UGCGGCUGUgcGU-AUUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 63169 0.72 0.623236
Target:  5'- aGCU-UGCCGACACGCcgGcGCCgCACCa -3'
miRNA:   3'- -UGAuGCGGCUGUGCGuaU-UGG-GUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.