miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22920 3' -54.3 NC_005137.2 + 130772 0.68 0.855403
Target:  5'- gGCUuuGUCGGCGCGCGUGuCCgCGCUUu -3'
miRNA:   3'- -UGAugCGGCUGUGCGUAUuGG-GUGGA- -5'
22920 3' -54.3 NC_005137.2 + 123118 0.67 0.905629
Target:  5'- aGCUGCGCCGguguGCACGUuuu-CCUACg- -3'
miRNA:   3'- -UGAUGCGGC----UGUGCGuauuGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 122875 0.69 0.813084
Target:  5'- uGCUaagcACGCCcaGCACGCGUAACCUuggcaacgGCCg -3'
miRNA:   3'- -UGA----UGCGGc-UGUGCGUAUUGGG--------UGGa -5'
22920 3' -54.3 NC_005137.2 + 122498 0.67 0.903715
Target:  5'- aACUGCGUCGcCGCGCGUcuuuuucacgugcaAGCCUGCa- -3'
miRNA:   3'- -UGAUGCGGCuGUGCGUA--------------UUGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 115881 0.67 0.878316
Target:  5'- uGCUugGCaaCGACGCGUGUug-CCACCa -3'
miRNA:   3'- -UGAugCG--GCUGUGCGUAuugGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 111538 0.69 0.785561
Target:  5'- aGCU--GCUGGCaaGCGCuUGACCCACCa -3'
miRNA:   3'- -UGAugCGGCUG--UGCGuAUUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 110853 0.71 0.685909
Target:  5'- gUUGCGCaCG-CGCGCAUGACCCGauaCUu -3'
miRNA:   3'- uGAUGCG-GCuGUGCGUAUUGGGUg--GA- -5'
22920 3' -54.3 NC_005137.2 + 110598 0.67 0.89245
Target:  5'- --cGCGCCGGC-CGCGgugugcacGCUCACCg -3'
miRNA:   3'- ugaUGCGGCUGuGCGUau------UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 108264 0.71 0.685909
Target:  5'- uGCUGCGaUCGGCGCGCAacGCgUACCa -3'
miRNA:   3'- -UGAUGC-GGCUGUGCGUauUGgGUGGa -5'
22920 3' -54.3 NC_005137.2 + 106432 0.66 0.917825
Target:  5'- --gGCGCCGugGgGCAUcGCgUGCCUg -3'
miRNA:   3'- ugaUGCGGCugUgCGUAuUGgGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 103749 0.66 0.92355
Target:  5'- cACUGCGCCGAaucCGUGUuggacACCCAgCg -3'
miRNA:   3'- -UGAUGCGGCUgu-GCGUAu----UGGGUgGa -5'
22920 3' -54.3 NC_005137.2 + 103346 0.67 0.911851
Target:  5'- uACUcCGUuuuCGACG-GCGUAGCCCACUa -3'
miRNA:   3'- -UGAuGCG---GCUGUgCGUAUUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 99766 0.7 0.743911
Target:  5'- uGCUugGCgCGGCGCGCGUuugcaacaaacuAacccuauguuuugaACCCACCg -3'
miRNA:   3'- -UGAugCG-GCUGUGCGUA------------U--------------UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 96402 0.72 0.654658
Target:  5'- aGCcGCGCCGACcgcuacccGCGCGgcgacgcGCCCGCCg -3'
miRNA:   3'- -UGaUGCGGCUG--------UGCGUau-----UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 96312 0.67 0.8855
Target:  5'- --cACGCCGGCGCGCAagugUGGaCUGCCg -3'
miRNA:   3'- ugaUGCGGCUGUGCGU----AUUgGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 95655 0.66 0.929023
Target:  5'- -gUGCGCCGACGgGCAaGugC-GCCUg -3'
miRNA:   3'- ugAUGCGGCUGUgCGUaUugGgUGGA- -5'
22920 3' -54.3 NC_005137.2 + 93620 0.68 0.870901
Target:  5'- aACgGCGCUGGCGCGCAccguGCCCGu-- -3'
miRNA:   3'- -UGaUGCGGCUGUGCGUau--UGGGUgga -5'
22920 3' -54.3 NC_005137.2 + 88200 0.74 0.540317
Target:  5'- gGCcACGCCGuccCACGUgGUGGCCCGCCUc -3'
miRNA:   3'- -UGaUGCGGCu--GUGCG-UAUUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 84506 0.67 0.897839
Target:  5'- gACaACGCCGucacuuuuggauCGCGCAacACCUACCg -3'
miRNA:   3'- -UGaUGCGGCu-----------GUGCGUauUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 81800 0.69 0.793966
Target:  5'- uUUGCGUCGcGCGuCGCGUAucgauguGCCCACCg -3'
miRNA:   3'- uGAUGCGGC-UGU-GCGUAU-------UGGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.