miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22920 3' -54.3 NC_005137.2 + 16540 1.07 0.0046
Target:  5'- gACUACGCCGACACGCAUAACCCACCUc -3'
miRNA:   3'- -UGAUGCGGCUGUGCGUAUUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 122498 0.67 0.903715
Target:  5'- aACUGCGUCGcCGCGCGUcuuuuucacgugcaAGCCUGCa- -3'
miRNA:   3'- -UGAUGCGGCuGUGCGUA--------------UUGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 123118 0.67 0.905629
Target:  5'- aGCUGCGCCGguguGCACGUuuu-CCUACg- -3'
miRNA:   3'- -UGAUGCGGC----UGUGCGuauuGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 50627 0.66 0.92355
Target:  5'- --cACGCCGGCACGgGgcuGCagCACCUu -3'
miRNA:   3'- ugaUGCGGCUGUGCgUau-UGg-GUGGA- -5'
22920 3' -54.3 NC_005137.2 + 103749 0.66 0.92355
Target:  5'- cACUGCGCCGAaucCGUGUuggacACCCAgCg -3'
miRNA:   3'- -UGAUGCGGCUgu-GCGUAu----UGGGUgGa -5'
22920 3' -54.3 NC_005137.2 + 95655 0.66 0.929023
Target:  5'- -gUGCGCCGACGgGCAaGugC-GCCUg -3'
miRNA:   3'- ugAUGCGGCUGUgCGUaUugGgUGGA- -5'
22920 3' -54.3 NC_005137.2 + 59946 0.66 0.929023
Target:  5'- aGCUggcGCGCCucguuGAUGCGCAU-GCCCguACCUa -3'
miRNA:   3'- -UGA---UGCGG-----CUGUGCGUAuUGGG--UGGA- -5'
22920 3' -54.3 NC_005137.2 + 48888 0.66 0.934247
Target:  5'- uACUGCGCCG-CGCuGCGgc-UUCGCCUg -3'
miRNA:   3'- -UGAUGCGGCuGUG-CGUauuGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 70592 0.66 0.93922
Target:  5'- uGCUGCGCgGGCggcuuuuuguuGCGCugAAUCCACUUg -3'
miRNA:   3'- -UGAUGCGgCUG-----------UGCGuaUUGGGUGGA- -5'
22920 3' -54.3 NC_005137.2 + 96312 0.67 0.8855
Target:  5'- --cACGCCGGCGCGCAagugUGGaCUGCCg -3'
miRNA:   3'- ugaUGCGGCUGUGCGU----AUUgGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 50267 0.67 0.882654
Target:  5'- gAUUAUGCCGAUAgcCGCGgucaguuuuucgcGGCCCACCc -3'
miRNA:   3'- -UGAUGCGGCUGU--GCGUa------------UUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 96402 0.72 0.654658
Target:  5'- aGCcGCGCCGACcgcuacccGCGCGgcgacgcGCCCGCCg -3'
miRNA:   3'- -UGaUGCGGCUG--------UGCGUau-----UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 13263 0.7 0.766475
Target:  5'- gGCUAUagGCCGGCGUGgGUAGCaCCGCCa -3'
miRNA:   3'- -UGAUG--CGGCUGUGCgUAUUG-GGUGGa -5'
22920 3' -54.3 NC_005137.2 + 111538 0.69 0.785561
Target:  5'- aGCU--GCUGGCaaGCGCuUGACCCACCa -3'
miRNA:   3'- -UGAugCGGCUG--UGCGuAUUGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 81800 0.69 0.793966
Target:  5'- uUUGCGUCGcGCGuCGCGUAucgauguGCCCACCg -3'
miRNA:   3'- uGAUGCGGC-UGU-GCGUAU-------UGGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 42132 0.69 0.794893
Target:  5'- cGCUGCGuUCGACGCGUGgaa-CCGCCg -3'
miRNA:   3'- -UGAUGC-GGCUGUGCGUauugGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 20954 0.68 0.839058
Target:  5'- gACUGCGUcugcugccugCGGCGCGCGUuuuGCCgCGCUUg -3'
miRNA:   3'- -UGAUGCG----------GCUGUGCGUAu--UGG-GUGGA- -5'
22920 3' -54.3 NC_005137.2 + 42471 0.68 0.870901
Target:  5'- aGCUACGCCaACuggGCGCugAACCCGCa- -3'
miRNA:   3'- -UGAUGCGGcUG---UGCGuaUUGGGUGga -5'
22920 3' -54.3 NC_005137.2 + 115881 0.67 0.878316
Target:  5'- uGCUugGCaaCGACGCGUGUug-CCACCa -3'
miRNA:   3'- -UGAugCG--GCUGUGCGUAuugGGUGGa -5'
22920 3' -54.3 NC_005137.2 + 25857 0.77 0.372143
Target:  5'- gACU-CGCCGACAcCGCGUcccAAUCCACCUu -3'
miRNA:   3'- -UGAuGCGGCUGU-GCGUA---UUGGGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.