miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 3' -55.2 NC_005137.2 + 96688 0.67 0.872371
Target:  5'- gGACgGC-CGUACAcaaaaAGCGgguUCGGCGUugaCGCa -3'
miRNA:   3'- -CUG-CGaGCAUGU-----UCGC---AGCCGCA---GCG- -5'
22924 3' -55.2 NC_005137.2 + 70584 0.68 0.833014
Target:  5'- uGCGUUCGUGCugcGCGggCGGCuuuuuGUUGCg -3'
miRNA:   3'- cUGCGAGCAUGuu-CGCa-GCCG-----CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 79745 0.68 0.833014
Target:  5'- cGACGCaauggccgCGUu--AGCGUUGGCGUUGg -3'
miRNA:   3'- -CUGCGa-------GCAuguUCGCAGCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 48766 0.68 0.833014
Target:  5'- cGGCGCgaUCGUugGA-CG-CGGCGcCGCa -3'
miRNA:   3'- -CUGCG--AGCAugUUcGCaGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 84554 0.68 0.841284
Target:  5'- uGAUGCU-GUGCAAcaCGUCGGCG-CGUu -3'
miRNA:   3'- -CUGCGAgCAUGUUc-GCAGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 112454 0.68 0.857239
Target:  5'- gGACGCggCGgcaggAUggGCGaCGGCGcCGUg -3'
miRNA:   3'- -CUGCGa-GCa----UGuuCGCaGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 70156 0.68 0.857239
Target:  5'- gGugGCggugUCGgugaAGGUGUUGGCGUCGg -3'
miRNA:   3'- -CugCG----AGCaug-UUCGCAGCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 11195 0.67 0.864911
Target:  5'- aGCGCUUuUGCAAuGCGUUcGCgGUCGCg -3'
miRNA:   3'- cUGCGAGcAUGUU-CGCAGcCG-CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 112413 0.67 0.864911
Target:  5'- cGGCGCgccaUUGUGCAAGUa-CGGCGUUGg -3'
miRNA:   3'- -CUGCG----AGCAUGUUCGcaGCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 35988 0.68 0.833014
Target:  5'- gGACGCUC-UGCGAGCGuUCcGCGUUa- -3'
miRNA:   3'- -CUGCGAGcAUGUUCGC-AGcCGCAGcg -5'
22924 3' -55.2 NC_005137.2 + 2327 0.69 0.815928
Target:  5'- cGCGCUCGUGgAGGCGUgcaUGGcCGUaaacgUGCa -3'
miRNA:   3'- cUGCGAGCAUgUUCGCA---GCC-GCA-----GCG- -5'
22924 3' -55.2 NC_005137.2 + 78787 0.69 0.815928
Target:  5'- cGACGaguauaCGUGCcguuugcgGAGCGggagCGGCGUCGUc -3'
miRNA:   3'- -CUGCga----GCAUG--------UUCGCa---GCCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 110737 0.74 0.518588
Target:  5'- aGCGCUUGUGCGccgGGCGaUCGGUGUacgGCa -3'
miRNA:   3'- cUGCGAGCAUGU---UCGC-AGCCGCAg--CG- -5'
22924 3' -55.2 NC_005137.2 + 108142 0.71 0.711782
Target:  5'- -cCGgUCGU-CGGGCGgcggCGGCGUCGg -3'
miRNA:   3'- cuGCgAGCAuGUUCGCa---GCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 72370 0.7 0.731698
Target:  5'- cACGCUagUGUACAcGCGcaauUCGGCGgCGCa -3'
miRNA:   3'- cUGCGA--GCAUGUuCGC----AGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 38651 0.69 0.77041
Target:  5'- cGACGCUgG-GCAGGCG-CG-CGUUGCg -3'
miRNA:   3'- -CUGCGAgCaUGUUCGCaGCcGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 56475 0.69 0.77041
Target:  5'- -cCGCcuacacuaugUCGUGCAAcGCGUCG-UGUCGCg -3'
miRNA:   3'- cuGCG----------AGCAUGUU-CGCAGCcGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 102055 0.69 0.779799
Target:  5'- cGugGCUUuuuu-AGCGUCaGCGUCGCc -3'
miRNA:   3'- -CugCGAGcauguUCGCAGcCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 79667 0.69 0.789054
Target:  5'- --gGUUUGUGCAGGCG-CGGCGgCGg -3'
miRNA:   3'- cugCGAGCAUGUUCGCaGCCGCaGCg -5'
22924 3' -55.2 NC_005137.2 + 17849 0.69 0.815928
Target:  5'- uGGCG-UCGUGuCAAGCGUCGG-GUauUGCg -3'
miRNA:   3'- -CUGCgAGCAU-GUUCGCAGCCgCA--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.