miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 3' -55.2 NC_005137.2 + 26633 0.94 0.034027
Target:  5'- uGACGCUCGUACAAGCGUgcGCGUCGCa -3'
miRNA:   3'- -CUGCGAGCAUGUUCGCAgcCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 25571 0.8 0.240075
Target:  5'- aGugGCuUCGuUGCAAGCGUUGGCGuUUGCa -3'
miRNA:   3'- -CugCG-AGC-AUGUUCGCAGCCGC-AGCG- -5'
22924 3' -55.2 NC_005137.2 + 110714 0.74 0.4894
Target:  5'- aGACGCagGUGCGGGCGcacaUCGGCGg-GCa -3'
miRNA:   3'- -CUGCGagCAUGUUCGC----AGCCGCagCG- -5'
22924 3' -55.2 NC_005137.2 + 110737 0.74 0.518588
Target:  5'- aGCGCUUGUGCGccgGGCGaUCGGUGUacgGCa -3'
miRNA:   3'- cUGCGAGCAUGU---UCGC-AGCCGCAg--CG- -5'
22924 3' -55.2 NC_005137.2 + 26781 0.74 0.518588
Target:  5'- cACGCUUGUACGAGCGUCauuuuGUGguaCGCg -3'
miRNA:   3'- cUGCGAGCAUGUUCGCAGc----CGCa--GCG- -5'
22924 3' -55.2 NC_005137.2 + 64451 0.73 0.547436
Target:  5'- aGCGCgCGUcacccgaGCAAGCGuauugaccaUCGGCGUUGCg -3'
miRNA:   3'- cUGCGaGCA-------UGUUCGC---------AGCCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 43917 0.71 0.681415
Target:  5'- cGCGCUgGUAguAGCGUucguUGGCG-CGCa -3'
miRNA:   3'- cUGCGAgCAUguUCGCA----GCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 131106 0.71 0.691591
Target:  5'- -cCGCUUGUAUAaaAGCG-CGcGCGUCGUc -3'
miRNA:   3'- cuGCGAGCAUGU--UCGCaGC-CGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 16353 0.71 0.701716
Target:  5'- uGCGCUCGaACAuaAGCccggUGGCGUCGUc -3'
miRNA:   3'- cUGCGAGCaUGU--UCGca--GCCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 46253 0.71 0.701716
Target:  5'- cACGCUCGUGC--GUGUUGcaCGUCGCg -3'
miRNA:   3'- cUGCGAGCAUGuuCGCAGCc-GCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 108142 0.71 0.711782
Target:  5'- -cCGgUCGU-CGGGCGgcggCGGCGUCGg -3'
miRNA:   3'- cuGCgAGCAuGUUCGCa---GCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 22568 0.7 0.721779
Target:  5'- uGACGCUCc-GC-AGCGUCaGGCG-CGCc -3'
miRNA:   3'- -CUGCGAGcaUGuUCGCAG-CCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 122538 0.7 0.721779
Target:  5'- gGGCGCUaaggcgGCGGGCGUgGGCGU-GCu -3'
miRNA:   3'- -CUGCGAgca---UGUUCGCAgCCGCAgCG- -5'
22924 3' -55.2 NC_005137.2 + 31862 0.7 0.721779
Target:  5'- cGACGCgaaCGUGCAcaCGUCGGUGcgacCGCa -3'
miRNA:   3'- -CUGCGa--GCAUGUucGCAGCCGCa---GCG- -5'
22924 3' -55.2 NC_005137.2 + 72370 0.7 0.731698
Target:  5'- cACGCUagUGUACAcGCGcaauUCGGCGgCGCa -3'
miRNA:   3'- cUGCGA--GCAUGUuCGC----AGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 72471 0.7 0.750297
Target:  5'- cGCGUUCGgACAGuggcgccGCGUUGGCGUCa- -3'
miRNA:   3'- cUGCGAGCaUGUU-------CGCAGCCGCAGcg -5'
22924 3' -55.2 NC_005137.2 + 109056 0.69 0.769464
Target:  5'- aGCGUUCGUGCGGccuuguaagaaccGCGUCaaGCGUUGCc -3'
miRNA:   3'- cUGCGAGCAUGUU-------------CGCAGc-CGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 56475 0.69 0.77041
Target:  5'- -cCGCcuacacuaugUCGUGCAAcGCGUCG-UGUCGCg -3'
miRNA:   3'- cuGCG----------AGCAUGUU-CGCAGCcGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 38651 0.69 0.77041
Target:  5'- cGACGCUgG-GCAGGCG-CG-CGUUGCg -3'
miRNA:   3'- -CUGCGAgCaUGUUCGCaGCcGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 102055 0.69 0.779799
Target:  5'- cGugGCUUuuuu-AGCGUCaGCGUCGCc -3'
miRNA:   3'- -CugCGAGcauguUCGCAGcCGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.