miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 3' -55.2 NC_005137.2 + 1671 0.66 0.918248
Target:  5'- uGGCcgaaUUGaACAAcGCGUCGGCGcCGCg -3'
miRNA:   3'- -CUGcg--AGCaUGUU-CGCAGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 2007 0.66 0.917674
Target:  5'- --aGCUCGUGCAcGCuG-CGGCGcagacuauuuaggUCGCg -3'
miRNA:   3'- cugCGAGCAUGUuCG-CaGCCGC-------------AGCG- -5'
22924 3' -55.2 NC_005137.2 + 2327 0.69 0.815928
Target:  5'- cGCGCUCGUGgAGGCGUgcaUGGcCGUaaacgUGCa -3'
miRNA:   3'- cUGCGAGCAUgUUCGCA---GCC-GCA-----GCG- -5'
22924 3' -55.2 NC_005137.2 + 11195 0.67 0.864911
Target:  5'- aGCGCUUuUGCAAuGCGUUcGCgGUCGCg -3'
miRNA:   3'- cUGCGAGcAUGUU-CGCAGcCG-CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 16353 0.71 0.701716
Target:  5'- uGCGCUCGaACAuaAGCccggUGGCGUCGUc -3'
miRNA:   3'- cUGCGAGCaUGU--UCGca--GCCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 17312 0.66 0.918248
Target:  5'- uGACGCgcuGUGCGA-CGUgcGCGUCGCa -3'
miRNA:   3'- -CUGCGag-CAUGUUcGCAgcCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 17849 0.69 0.815928
Target:  5'- uGGCG-UCGUGuCAAGCGUCGG-GUauUGCg -3'
miRNA:   3'- -CUGCgAGCAU-GUUCGCAGCCgCA--GCG- -5'
22924 3' -55.2 NC_005137.2 + 21136 0.66 0.918248
Target:  5'- -cCGUuugCGUGCAAGCG-CGGCaaaacgCGCg -3'
miRNA:   3'- cuGCGa--GCAUGUUCGCaGCCGca----GCG- -5'
22924 3' -55.2 NC_005137.2 + 22568 0.7 0.721779
Target:  5'- uGACGCUCc-GC-AGCGUCaGGCG-CGCc -3'
miRNA:   3'- -CUGCGAGcaUGuUCGCAG-CCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 25571 0.8 0.240075
Target:  5'- aGugGCuUCGuUGCAAGCGUUGGCGuUUGCa -3'
miRNA:   3'- -CugCG-AGC-AUGUUCGCAGCCGC-AGCG- -5'
22924 3' -55.2 NC_005137.2 + 26633 0.94 0.034027
Target:  5'- uGACGCUCGUACAAGCGUgcGCGUCGCa -3'
miRNA:   3'- -CUGCGAGCAUGUUCGCAgcCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 26781 0.74 0.518588
Target:  5'- cACGCUUGUACGAGCGUCauuuuGUGguaCGCg -3'
miRNA:   3'- cUGCGAGCAUGUUCGCAGc----CGCa--GCG- -5'
22924 3' -55.2 NC_005137.2 + 28228 0.66 0.928696
Target:  5'- cGCGCUgcgUGUACAgccgucuGGCGcaucccagCGcGCGUCGCg -3'
miRNA:   3'- cUGCGA---GCAUGU-------UCGCa-------GC-CGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 31862 0.7 0.721779
Target:  5'- cGACGCgaaCGUGCAcaCGUCGGUGcgacCGCa -3'
miRNA:   3'- -CUGCGa--GCAUGUucGCAGCCGCa---GCG- -5'
22924 3' -55.2 NC_005137.2 + 35988 0.68 0.833014
Target:  5'- gGACGCUC-UGCGAGCGuUCcGCGUUa- -3'
miRNA:   3'- -CUGCGAGcAUGUUCGC-AGcCGCAGcg -5'
22924 3' -55.2 NC_005137.2 + 38651 0.69 0.77041
Target:  5'- cGACGCUgG-GCAGGCG-CG-CGUUGCg -3'
miRNA:   3'- -CUGCGAgCaUGUUCGCaGCcGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 39841 0.68 0.833014
Target:  5'- uGACGUUUGUACAAGaaugcuguucacCGgaaagugCGGCGcCGCu -3'
miRNA:   3'- -CUGCGAGCAUGUUC------------GCa------GCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 41831 0.66 0.905689
Target:  5'- aGGCGUuacgaagUCGU-CGAGC-UCGGCacGUCGCu -3'
miRNA:   3'- -CUGCG-------AGCAuGUUCGcAGCCG--CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 43917 0.71 0.681415
Target:  5'- cGCGCUgGUAguAGCGUucguUGGCG-CGCa -3'
miRNA:   3'- cUGCGAgCAUguUCGCA----GCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 43977 0.68 0.824559
Target:  5'- cGCGUUCG-ACGGGCGcgggCGGCugcucgugccGUCGCu -3'
miRNA:   3'- cUGCGAGCaUGUUCGCa---GCCG----------CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.