miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 3' -55.2 NC_005137.2 + 45277 0.67 0.893425
Target:  5'- gGugGUuaagUUGUGCGAcGCGUCGcGCGccCGCg -3'
miRNA:   3'- -CugCG----AGCAUGUU-CGCAGC-CGCa-GCG- -5'
22924 3' -55.2 NC_005137.2 + 46253 0.71 0.701716
Target:  5'- cACGCUCGUGC--GUGUUGcaCGUCGCg -3'
miRNA:   3'- cUGCGAGCAUGuuCGCAGCc-GCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 46841 0.66 0.906311
Target:  5'- uGCGCgCGUGCGAGCauacUGGCG-CGUg -3'
miRNA:   3'- cUGCGaGCAUGUUCGca--GCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 48766 0.68 0.833014
Target:  5'- cGGCGCgaUCGUugGA-CG-CGGCGcCGCa -3'
miRNA:   3'- -CUGCG--AGCAugUUcGCaGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 49207 0.66 0.929221
Target:  5'- uGCGCUCGcAC-GGCuaccuGUCGGUgccgGUCGCu -3'
miRNA:   3'- cUGCGAGCaUGuUCG-----CAGCCG----CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 56475 0.69 0.77041
Target:  5'- -cCGCcuacacuaugUCGUGCAAcGCGUCG-UGUCGCg -3'
miRNA:   3'- cuGCG----------AGCAUGUU-CGCAGCcGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 63453 0.66 0.928696
Target:  5'- gGGCGCgCGUugugcccGCGAGCGaCGGCGagacCGUg -3'
miRNA:   3'- -CUGCGaGCA-------UGUUCGCaGCCGCa---GCG- -5'
22924 3' -55.2 NC_005137.2 + 64451 0.73 0.547436
Target:  5'- aGCGCgCGUcacccgaGCAAGCGuauugaccaUCGGCGUUGCg -3'
miRNA:   3'- cUGCGaGCA-------UGUUCGC---------AGCCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 70156 0.68 0.857239
Target:  5'- gGugGCggugUCGgugaAGGUGUUGGCGUCGg -3'
miRNA:   3'- -CugCG----AGCaug-UUCGCAGCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 70584 0.68 0.833014
Target:  5'- uGCGUUCGUGCugcGCGggCGGCuuuuuGUUGCg -3'
miRNA:   3'- cUGCGAGCAUGuu-CGCa-GCCG-----CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 72370 0.7 0.731698
Target:  5'- cACGCUagUGUACAcGCGcaauUCGGCGgCGCa -3'
miRNA:   3'- cUGCGA--GCAUGUuCGC----AGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 72471 0.7 0.750297
Target:  5'- cGCGUUCGgACAGuggcgccGCGUUGGCGUCa- -3'
miRNA:   3'- cUGCGAGCaUGUU-------CGCAGCCGCAGcg -5'
22924 3' -55.2 NC_005137.2 + 72519 0.68 0.849361
Target:  5'- uGCGCguguacacuagCGUGCAcGCGgagCGGCGcagcUCGCg -3'
miRNA:   3'- cUGCGa----------GCAUGUuCGCa--GCCGC----AGCG- -5'
22924 3' -55.2 NC_005137.2 + 78787 0.69 0.815928
Target:  5'- cGACGaguauaCGUGCcguuugcgGAGCGggagCGGCGUCGUc -3'
miRNA:   3'- -CUGCga----GCAUG--------UUCGCa---GCCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 79667 0.69 0.789054
Target:  5'- --gGUUUGUGCAGGCG-CGGCGgCGg -3'
miRNA:   3'- cugCGAGCAUGUUCGCaGCCGCaGCg -5'
22924 3' -55.2 NC_005137.2 + 79745 0.68 0.833014
Target:  5'- cGACGCaauggccgCGUu--AGCGUUGGCGUUGg -3'
miRNA:   3'- -CUGCGa-------GCAuguUCGCAGCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 84554 0.68 0.841284
Target:  5'- uGAUGCU-GUGCAAcaCGUCGGCG-CGUu -3'
miRNA:   3'- -CUGCGAgCAUGUUc-GCAGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 93519 0.66 0.918248
Target:  5'- cGGCGCaaaUGCAcGCGUCGGCcgaaaacugcGUCGUg -3'
miRNA:   3'- -CUGCGagcAUGUuCGCAGCCG----------CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 96493 0.66 0.918248
Target:  5'- uGCGCgUCGUguccACGGGCGcuaugacuagCGGCG-CGCa -3'
miRNA:   3'- cUGCG-AGCA----UGUUCGCa---------GCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 96688 0.67 0.872371
Target:  5'- gGACgGC-CGUACAcaaaaAGCGgguUCGGCGUugaCGCa -3'
miRNA:   3'- -CUG-CGaGCAUGU-----UCGC---AGCCGCA---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.