miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 3' -55.2 NC_005137.2 + 131106 0.71 0.691591
Target:  5'- -cCGCUUGUAUAaaAGCG-CGcGCGUCGUc -3'
miRNA:   3'- cuGCGAGCAUGU--UCGCaGC-CGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 130786 0.66 0.929221
Target:  5'- --aGCUCGcuuuUGCuGGCuuuGUCGGCG-CGCg -3'
miRNA:   3'- cugCGAGC----AUGuUCG---CAGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 122538 0.7 0.721779
Target:  5'- gGGCGCUaaggcgGCGGGCGUgGGCGU-GCu -3'
miRNA:   3'- -CUGCGAgca---UGUUCGCAgCCGCAgCG- -5'
22924 3' -55.2 NC_005137.2 + 119731 0.68 0.833014
Target:  5'- uGugGCaCGUGCucAGCGU--GCGUCGCu -3'
miRNA:   3'- -CugCGaGCAUGu-UCGCAgcCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 112454 0.68 0.857239
Target:  5'- gGACGCggCGgcaggAUggGCGaCGGCGcCGUg -3'
miRNA:   3'- -CUGCGa-GCa----UGuuCGCaGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 112413 0.67 0.864911
Target:  5'- cGGCGCgccaUUGUGCAAGUa-CGGCGUUGg -3'
miRNA:   3'- -CUGCG----AGCAUGUUCGcaGCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 110978 0.66 0.923855
Target:  5'- cACGaCUCuUGCGcgucGGCGggCGGCGUCGa -3'
miRNA:   3'- cUGC-GAGcAUGU----UCGCa-GCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 110737 0.74 0.518588
Target:  5'- aGCGCUUGUGCGccgGGCGaUCGGUGUacgGCa -3'
miRNA:   3'- cUGCGAGCAUGU---UCGC-AGCCGCAg--CG- -5'
22924 3' -55.2 NC_005137.2 + 110714 0.74 0.4894
Target:  5'- aGACGCagGUGCGGGCGcacaUCGGCGg-GCa -3'
miRNA:   3'- -CUGCGagCAUGUUCGC----AGCCGCagCG- -5'
22924 3' -55.2 NC_005137.2 + 109056 0.69 0.769464
Target:  5'- aGCGUUCGUGCGGccuuguaagaaccGCGUCaaGCGUUGCc -3'
miRNA:   3'- cUGCGAGCAUGUU-------------CGCAGc-CGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 108272 0.67 0.864911
Target:  5'- gGAUGCg-GUGCu-GCGaUCGGCG-CGCa -3'
miRNA:   3'- -CUGCGagCAUGuuCGC-AGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 108142 0.71 0.711782
Target:  5'- -cCGgUCGU-CGGGCGgcggCGGCGUCGg -3'
miRNA:   3'- cuGCgAGCAuGUUCGCa---GCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 102055 0.69 0.779799
Target:  5'- cGugGCUUuuuu-AGCGUCaGCGUCGCc -3'
miRNA:   3'- -CugCGAGcauguUCGCAGcCGCAGCG- -5'
22924 3' -55.2 NC_005137.2 + 98360 0.67 0.872371
Target:  5'- cACGCUUGUGCGccGGU-UUGGCGccgUCGCg -3'
miRNA:   3'- cUGCGAGCAUGU--UCGcAGCCGC---AGCG- -5'
22924 3' -55.2 NC_005137.2 + 96688 0.67 0.872371
Target:  5'- gGACgGC-CGUACAcaaaaAGCGgguUCGGCGUugaCGCa -3'
miRNA:   3'- -CUG-CGaGCAUGU-----UCGC---AGCCGCA---GCG- -5'
22924 3' -55.2 NC_005137.2 + 96493 0.66 0.918248
Target:  5'- uGCGCgUCGUguccACGGGCGcuaugacuagCGGCG-CGCa -3'
miRNA:   3'- cUGCG-AGCA----UGUUCGCa---------GCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 93519 0.66 0.918248
Target:  5'- cGGCGCaaaUGCAcGCGUCGGCcgaaaacugcGUCGUg -3'
miRNA:   3'- -CUGCGagcAUGUuCGCAGCCG----------CAGCG- -5'
22924 3' -55.2 NC_005137.2 + 84554 0.68 0.841284
Target:  5'- uGAUGCU-GUGCAAcaCGUCGGCG-CGUu -3'
miRNA:   3'- -CUGCGAgCAUGUUc-GCAGCCGCaGCG- -5'
22924 3' -55.2 NC_005137.2 + 79745 0.68 0.833014
Target:  5'- cGACGCaauggccgCGUu--AGCGUUGGCGUUGg -3'
miRNA:   3'- -CUGCGa-------GCAuguUCGCAGCCGCAGCg -5'
22924 3' -55.2 NC_005137.2 + 79667 0.69 0.789054
Target:  5'- --gGUUUGUGCAGGCG-CGGCGgCGg -3'
miRNA:   3'- cugCGAGCAUGUUCGCaGCCGCaGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.