miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22928 5' -52.8 NC_005137.2 + 70293 0.66 0.975455
Target:  5'- cCGCCAccuaGCccgAACCGUUGGgcgagcccaUGUACUuuccgGCCGa -3'
miRNA:   3'- -GCGGU----UG---UUGGCAACC---------ACAUGG-----UGGC- -5'
22928 5' -52.8 NC_005137.2 + 68746 0.66 0.97276
Target:  5'- cCGUCGAcCAACgCGUUGGU--GCCGCUu -3'
miRNA:   3'- -GCGGUU-GUUG-GCAACCAcaUGGUGGc -5'
22928 5' -52.8 NC_005137.2 + 13408 0.66 0.969857
Target:  5'- aCGCCGGCcuauGCCaucaccUGGUGUACCAagCGu -3'
miRNA:   3'- -GCGGUUGu---UGGca----ACCACAUGGUg-GC- -5'
22928 5' -52.8 NC_005137.2 + 88200 0.66 0.969857
Target:  5'- gGCCAc--GCCGUcccacgUGGUGgcCCGCCu -3'
miRNA:   3'- gCGGUuguUGGCA------ACCACauGGUGGc -5'
22928 5' -52.8 NC_005137.2 + 96305 0.66 0.96674
Target:  5'- uCGCCGACAcGCCGgcgcgcaaGUGUggACUGCCGa -3'
miRNA:   3'- -GCGGUUGU-UGGCaac-----CACA--UGGUGGC- -5'
22928 5' -52.8 NC_005137.2 + 9414 0.67 0.959836
Target:  5'- gCGCgCAACAGCCGUcucaaGGUuUGCCAUgGc -3'
miRNA:   3'- -GCG-GUUGUUGGCAa----CCAcAUGGUGgC- -5'
22928 5' -52.8 NC_005137.2 + 45821 0.67 0.956038
Target:  5'- gCGCCGccGCccaCGUUGGUGUACaCGuuGa -3'
miRNA:   3'- -GCGGU--UGuugGCAACCACAUG-GUggC- -5'
22928 5' -52.8 NC_005137.2 + 63158 0.67 0.952004
Target:  5'- aCGCCGGC-GCCGcaccaUGG-GU-CCGCCGa -3'
miRNA:   3'- -GCGGUUGuUGGCa----ACCaCAuGGUGGC- -5'
22928 5' -52.8 NC_005137.2 + 108286 0.67 0.943208
Target:  5'- cCGcCCGACGACCGggaugcGGUGcUGCgAUCGg -3'
miRNA:   3'- -GC-GGUUGUUGGCaa----CCAC-AUGgUGGC- -5'
22928 5' -52.8 NC_005137.2 + 95998 0.68 0.930293
Target:  5'- gCGCCGACcacaacaauauuucaGACgCGgacaUGGUGUuucaaGCCACCGc -3'
miRNA:   3'- -GCGGUUG---------------UUG-GCa---ACCACA-----UGGUGGC- -5'
22928 5' -52.8 NC_005137.2 + 18989 0.68 0.928156
Target:  5'- -aCCGGCAAauGUUccaagcguaaGGUGUGCCACCa -3'
miRNA:   3'- gcGGUUGUUggCAA----------CCACAUGGUGGc -5'
22928 5' -52.8 NC_005137.2 + 70020 0.68 0.916868
Target:  5'- cCGCCGGCAaucccacggcACCGcguacgUGGUGcGCC-CCGa -3'
miRNA:   3'- -GCGGUUGU----------UGGCa-----ACCACaUGGuGGC- -5'
22928 5' -52.8 NC_005137.2 + 110533 0.69 0.898069
Target:  5'- gCGUCuuGCAGgCGUUGGagGUGCCcGCCGa -3'
miRNA:   3'- -GCGGu-UGUUgGCAACCa-CAUGG-UGGC- -5'
22928 5' -52.8 NC_005137.2 + 29570 0.69 0.898069
Target:  5'- gGCCAAuugaauCAGCCGUUGGaggugGUGCCAauGa -3'
miRNA:   3'- gCGGUU------GUUGGCAACCa----CAUGGUggC- -5'
22928 5' -52.8 NC_005137.2 + 110589 0.7 0.869632
Target:  5'- gCGCCcauccugugcGACGACCaGUUGGUGUccguggugACgGCCGu -3'
miRNA:   3'- -GCGG----------UUGUUGG-CAACCACA--------UGgUGGC- -5'
22928 5' -52.8 NC_005137.2 + 117535 0.71 0.819534
Target:  5'- aCGCUAGauuaccauccUAACCuGUUGGUGUaccggcaaagugcGCCGCCGg -3'
miRNA:   3'- -GCGGUU----------GUUGG-CAACCACA-------------UGGUGGC- -5'
22928 5' -52.8 NC_005137.2 + 48851 0.72 0.774403
Target:  5'- aGCCAAC-GCCGcguacucGGUGUACUGCUGg -3'
miRNA:   3'- gCGGUUGuUGGCaa-----CCACAUGGUGGC- -5'
22928 5' -52.8 NC_005137.2 + 34831 0.72 0.774403
Target:  5'- uGCCcACGGCCGUcaccucgaUGGgaugGUACCGCaCGg -3'
miRNA:   3'- gCGGuUGUUGGCA--------ACCa---CAUGGUG-GC- -5'
22928 5' -52.8 NC_005137.2 + 130178 0.72 0.754999
Target:  5'- uCGCC-GCAACC--UGGUGUaaacguGCCGCCGc -3'
miRNA:   3'- -GCGGuUGUUGGcaACCACA------UGGUGGC- -5'
22928 5' -52.8 NC_005137.2 + 105670 0.72 0.745121
Target:  5'- uGCCAGCAGCCGUgUGGc--GCCGCUu -3'
miRNA:   3'- gCGGUUGUUGGCA-ACCacaUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.