miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22940 5' -51.7 NC_005137.2 + 28074 0.7 0.892556
Target:  5'- cCAGACG-GCUGUACAcGCaGCGCGGc- -3'
miRNA:   3'- -GUUUGCgCGGCAUGUuUG-CGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 79650 0.7 0.89935
Target:  5'- aUAAACGCGUuaaacacgguuUGUGCAGGCGCgGCGGc- -3'
miRNA:   3'- -GUUUGCGCG-----------GCAUGUUUGCG-UGCCac -5'
22940 5' -51.7 NC_005137.2 + 26629 0.7 0.89935
Target:  5'- aAAAUGaCGCuCGUACAAGCGUGCGcGUc -3'
miRNA:   3'- gUUUGC-GCG-GCAUGUUUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 41330 0.7 0.905894
Target:  5'- aAAACGCuGCUGgaGCAcACGCGCGGg- -3'
miRNA:   3'- gUUUGCG-CGGCa-UGUuUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 64312 0.7 0.905894
Target:  5'- ----gGCGCCGU-UAAACGCGCagGGUGc -3'
miRNA:   3'- guuugCGCGGCAuGUUUGCGUG--CCAC- -5'
22940 5' -51.7 NC_005137.2 + 34471 0.69 0.912185
Target:  5'- -cGACGCGCaaUugGAACGCaaacACGGUGu -3'
miRNA:   3'- guUUGCGCGgcAugUUUGCG----UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 118105 0.69 0.912185
Target:  5'- --cGCGUGCgGUGCAAcaagguGCGCACcGUGa -3'
miRNA:   3'- guuUGCGCGgCAUGUU------UGCGUGcCAC- -5'
22940 5' -51.7 NC_005137.2 + 70331 0.69 0.918222
Target:  5'- gCGGAgGCGUCG-GCGAAgGCGuCGGUGa -3'
miRNA:   3'- -GUUUgCGCGGCaUGUUUgCGU-GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 30014 0.69 0.918222
Target:  5'- uUAAGCGCGgCGUugAgaAGCGCGCGa-- -3'
miRNA:   3'- -GUUUGCGCgGCAugU--UUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 69428 0.69 0.924002
Target:  5'- cUAAACGCGCCGcgACc-GCGCACGc-- -3'
miRNA:   3'- -GUUUGCGCGGCa-UGuuUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 79314 0.69 0.924002
Target:  5'- gCAAACGaGCCGcGCAucACGUcuACGGUGg -3'
miRNA:   3'- -GUUUGCgCGGCaUGUu-UGCG--UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 32878 0.69 0.924002
Target:  5'- -cAACGCG-CGUACGacGACGCgguagccggcgGCGGUGa -3'
miRNA:   3'- guUUGCGCgGCAUGU--UUGCG-----------UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 95345 0.69 0.924002
Target:  5'- gCGAACGCGCacguuCGUGCAAucccaGUACGGg- -3'
miRNA:   3'- -GUUUGCGCG-----GCAUGUUug---CGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 43839 0.69 0.929526
Target:  5'- uCGAACGCGauuugcaCGUGCgAAACGcCGCGGa- -3'
miRNA:   3'- -GUUUGCGCg------GCAUG-UUUGC-GUGCCac -5'
22940 5' -51.7 NC_005137.2 + 21788 0.69 0.933239
Target:  5'- aAAugGCGuuGcGCAAcaaaauaguucgacGCGCugGGUGu -3'
miRNA:   3'- gUUugCGCggCaUGUU--------------UGCGugCCAC- -5'
22940 5' -51.7 NC_005137.2 + 100407 0.68 0.939801
Target:  5'- --cGCGCGcCCGUGCGuugcGGCGCcCGGa- -3'
miRNA:   3'- guuUGCGC-GGCAUGU----UUGCGuGCCac -5'
22940 5' -51.7 NC_005137.2 + 100198 0.68 0.939801
Target:  5'- uGAACGCGCCGcGCGc-CGCGuCGGa- -3'
miRNA:   3'- gUUUGCGCGGCaUGUuuGCGU-GCCac -5'
22940 5' -51.7 NC_005137.2 + 56328 0.68 0.944556
Target:  5'- uUAAACGUGCaCGUGCuugccuguucGACGaCGCGGUa -3'
miRNA:   3'- -GUUUGCGCG-GCAUGu---------UUGC-GUGCCAc -5'
22940 5' -51.7 NC_005137.2 + 99344 0.68 0.944556
Target:  5'- -cAGCGCGUgGUACGcgucggaacAAUGCACGGc- -3'
miRNA:   3'- guUUGCGCGgCAUGU---------UUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 39736 0.68 0.949058
Target:  5'- gCAAuuGCGUGCUucACAAAUGCGUGGUGg -3'
miRNA:   3'- -GUU--UGCGCGGcaUGUUUGCGUGCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.