miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22940 5' -51.7 NC_005137.2 + 56531 1.08 0.007994
Target:  5'- gCAAACGCGCCGUACAAACGCACGGUGc -3'
miRNA:   3'- -GUUUGCGCGGCAUGUUUGCGUGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 95491 0.77 0.534517
Target:  5'- --uGCGCGCCGcACGGGCGCAucgcugacguggcCGGUGg -3'
miRNA:   3'- guuUGCGCGGCaUGUUUGCGU-------------GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 46093 0.74 0.70386
Target:  5'- uGGACGCGaCGUGCAAcACGCACGagcGUGg -3'
miRNA:   3'- gUUUGCGCgGCAUGUU-UGCGUGC---CAC- -5'
22940 5' -51.7 NC_005137.2 + 96458 0.74 0.724516
Target:  5'- aCuuGCGCGCCGgcgugucgGCGAAUGCACGcGUc -3'
miRNA:   3'- -GuuUGCGCGGCa-------UGUUUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 76129 0.73 0.754833
Target:  5'- ---gUGCGCCGUGCAccAACGCGCGc-- -3'
miRNA:   3'- guuuGCGCGGCAUGU--UUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 68391 0.72 0.797325
Target:  5'- aCGGACGCGUCGgccgaGCAcaucgacuuguacguGGCGCACGGg- -3'
miRNA:   3'- -GUUUGCGCGGCa----UGU---------------UUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 75974 0.72 0.802897
Target:  5'- -cGGCGCGCguugGUGCAcGGCGCACGGg- -3'
miRNA:   3'- guUUGCGCGg---CAUGU-UUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 60934 0.72 0.81205
Target:  5'- uCGGACGCGCacaaagGCGAaacGCGCACGGg- -3'
miRNA:   3'- -GUUUGCGCGgca---UGUU---UGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 17312 0.72 0.821027
Target:  5'- -uGACGCGCUGUGCG-ACGUGCGcGUc -3'
miRNA:   3'- guUUGCGCGGCAUGUuUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 110725 0.71 0.82982
Target:  5'- uGGGCGCGCCaagacgcagGUGCGGGCGCACa--- -3'
miRNA:   3'- gUUUGCGCGG---------CAUGUUUGCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 118004 0.71 0.838418
Target:  5'- cCGGACGCGuCCGUGCuGGugGUugcccCGGUGg -3'
miRNA:   3'- -GUUUGCGC-GGCAUG-UUugCGu----GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 125138 0.71 0.844318
Target:  5'- uCGAACGUcuugacaaugcaccGCCGcugacACGAugGCGCGGUGu -3'
miRNA:   3'- -GUUUGCG--------------CGGCa----UGUUugCGUGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 5248 0.71 0.846816
Target:  5'- --cACGCGCCGcucgAAACGCGCGGc- -3'
miRNA:   3'- guuUGCGCGGCaug-UUUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 69780 0.71 0.855003
Target:  5'- gCAGACGUGCCGUu--AACGCACa--- -3'
miRNA:   3'- -GUUUGCGCGGCAuguUUGCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 110403 0.71 0.860606
Target:  5'- aCAGACGUGgUGUuuccgcagcuggcaACGGGCGCgACGGUGa -3'
miRNA:   3'- -GUUUGCGCgGCA--------------UGUUUGCG-UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 112552 0.71 0.862974
Target:  5'- -uGGCGCGCCGUGCGcgauCGCGCa--- -3'
miRNA:   3'- guUUGCGCGGCAUGUuu--GCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 5230 0.7 0.878237
Target:  5'- -cGACGCGCCGUcucaaugucgcgGCGcACGCACGa-- -3'
miRNA:   3'- guUUGCGCGGCA------------UGUuUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 50238 0.7 0.885517
Target:  5'- --uGCGCgGCCGUGgAGGCGCGCGu-- -3'
miRNA:   3'- guuUGCG-CGGCAUgUUUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 95993 0.7 0.89047
Target:  5'- gGGACGCGCCGaccacaacaauauuuCAGACGCggacAUGGUGu -3'
miRNA:   3'- gUUUGCGCGGCau-------------GUUUGCG----UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 28074 0.7 0.892556
Target:  5'- cCAGACG-GCUGUACAcGCaGCGCGGc- -3'
miRNA:   3'- -GUUUGCgCGGCAUGUuUG-CGUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.