miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22940 5' -51.7 NC_005137.2 + 95345 0.69 0.924002
Target:  5'- gCGAACGCGCacguuCGUGCAAucccaGUACGGg- -3'
miRNA:   3'- -GUUUGCGCG-----GCAUGUUug---CGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 26629 0.7 0.89935
Target:  5'- aAAAUGaCGCuCGUACAAGCGUGCGcGUc -3'
miRNA:   3'- gUUUGC-GCG-GCAUGUUUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 79650 0.7 0.89935
Target:  5'- aUAAACGCGUuaaacacgguuUGUGCAGGCGCgGCGGc- -3'
miRNA:   3'- -GUUUGCGCG-----------GCAUGUUUGCG-UGCCac -5'
22940 5' -51.7 NC_005137.2 + 41330 0.7 0.905894
Target:  5'- aAAACGCuGCUGgaGCAcACGCGCGGg- -3'
miRNA:   3'- gUUUGCG-CGGCa-UGUuUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 34471 0.69 0.912185
Target:  5'- -cGACGCGCaaUugGAACGCaaacACGGUGu -3'
miRNA:   3'- guUUGCGCGgcAugUUUGCG----UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 118105 0.69 0.912185
Target:  5'- --cGCGUGCgGUGCAAcaagguGCGCACcGUGa -3'
miRNA:   3'- guuUGCGCGgCAUGUU------UGCGUGcCAC- -5'
22940 5' -51.7 NC_005137.2 + 70331 0.69 0.918222
Target:  5'- gCGGAgGCGUCG-GCGAAgGCGuCGGUGa -3'
miRNA:   3'- -GUUUgCGCGGCaUGUUUgCGU-GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 79314 0.69 0.924002
Target:  5'- gCAAACGaGCCGcGCAucACGUcuACGGUGg -3'
miRNA:   3'- -GUUUGCgCGGCaUGUu-UGCG--UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 32878 0.69 0.924002
Target:  5'- -cAACGCG-CGUACGacGACGCgguagccggcgGCGGUGa -3'
miRNA:   3'- guUUGCGCgGCAUGU--UUGCG-----------UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 28074 0.7 0.892556
Target:  5'- cCAGACG-GCUGUACAcGCaGCGCGGc- -3'
miRNA:   3'- -GUUUGCgCGGCAUGUuUG-CGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 95993 0.7 0.89047
Target:  5'- gGGACGCGCCGaccacaacaauauuuCAGACGCggacAUGGUGu -3'
miRNA:   3'- gUUUGCGCGGCau-------------GUUUGCG----UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 110403 0.71 0.860606
Target:  5'- aCAGACGUGgUGUuuccgcagcuggcaACGGGCGCgACGGUGa -3'
miRNA:   3'- -GUUUGCGCgGCA--------------UGUUUGCG-UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 95491 0.77 0.534517
Target:  5'- --uGCGCGCCGcACGGGCGCAucgcugacguggcCGGUGg -3'
miRNA:   3'- guuUGCGCGGCaUGUUUGCGU-------------GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 46093 0.74 0.70386
Target:  5'- uGGACGCGaCGUGCAAcACGCACGagcGUGg -3'
miRNA:   3'- gUUUGCGCgGCAUGUU-UGCGUGC---CAC- -5'
22940 5' -51.7 NC_005137.2 + 68391 0.72 0.797325
Target:  5'- aCGGACGCGUCGgccgaGCAcaucgacuuguacguGGCGCACGGg- -3'
miRNA:   3'- -GUUUGCGCGGCa----UGU---------------UUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 75974 0.72 0.802897
Target:  5'- -cGGCGCGCguugGUGCAcGGCGCACGGg- -3'
miRNA:   3'- guUUGCGCGg---CAUGU-UUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 17312 0.72 0.821027
Target:  5'- -uGACGCGCUGUGCG-ACGUGCGcGUc -3'
miRNA:   3'- guUUGCGCGGCAUGUuUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 125138 0.71 0.844318
Target:  5'- uCGAACGUcuugacaaugcaccGCCGcugacACGAugGCGCGGUGu -3'
miRNA:   3'- -GUUUGCG--------------CGGCa----UGUUugCGUGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 5248 0.71 0.846816
Target:  5'- --cACGCGCCGcucgAAACGCGCGGc- -3'
miRNA:   3'- guuUGCGCGGCaug-UUUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 69780 0.71 0.855003
Target:  5'- gCAGACGUGCCGUu--AACGCACa--- -3'
miRNA:   3'- -GUUUGCGCGGCAuguUUGCGUGccac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.