miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22940 5' -51.7 NC_005137.2 + 5230 0.7 0.878237
Target:  5'- -cGACGCGCCGUcucaaugucgcgGCGcACGCACGa-- -3'
miRNA:   3'- guUUGCGCGGCA------------UGUuUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 5248 0.71 0.846816
Target:  5'- --cACGCGCCGcucgAAACGCGCGGc- -3'
miRNA:   3'- guuUGCGCGGCaug-UUUGCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 11787 0.67 0.970983
Target:  5'- cUAAACGCGCCGc-CGAGCu--CGGUGc -3'
miRNA:   3'- -GUUUGCGCGGCauGUUUGcguGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 12847 0.68 0.95331
Target:  5'- -uGGCGCGCCGUuCcGACGCGCu--- -3'
miRNA:   3'- guUUGCGCGGCAuGuUUGCGUGccac -5'
22940 5' -51.7 NC_005137.2 + 14195 0.66 0.981183
Target:  5'- aCGAACaaGCC-UACAAGCGguauGCGGUGg -3'
miRNA:   3'- -GUUUGcgCGGcAUGUUUGCg---UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 17312 0.72 0.821027
Target:  5'- -uGACGCGCUGUGCG-ACGUGCGcGUc -3'
miRNA:   3'- guUUGCGCGGCAUGUuUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 18469 0.66 0.978932
Target:  5'- ----gGCGuCCGUGCAGucgcgaugccCGCGCGGUa -3'
miRNA:   3'- guuugCGC-GGCAUGUUu---------GCGUGCCAc -5'
22940 5' -51.7 NC_005137.2 + 21111 0.7 0.892556
Target:  5'- --cGCGCGCCGcaggcaGCAGACGCcagucgucGCGGUu -3'
miRNA:   3'- guuUGCGCGGCa-----UGUUUGCG--------UGCCAc -5'
22940 5' -51.7 NC_005137.2 + 21788 0.69 0.933239
Target:  5'- aAAugGCGuuGcGCAAcaaaauaguucgacGCGCugGGUGu -3'
miRNA:   3'- gUUugCGCggCaUGUU--------------UGCGugCCAC- -5'
22940 5' -51.7 NC_005137.2 + 22470 0.68 0.95331
Target:  5'- --cACGUGaaaaCCGUGCAAGcCGCGCGGc- -3'
miRNA:   3'- guuUGCGC----GGCAUGUUU-GCGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 25888 0.66 0.976487
Target:  5'- gCAAACGUccugGCCGUaGCAAugGUcaGCGGa- -3'
miRNA:   3'- -GUUUGCG----CGGCA-UGUUugCG--UGCCac -5'
22940 5' -51.7 NC_005137.2 + 26629 0.7 0.89935
Target:  5'- aAAAUGaCGCuCGUACAAGCGUGCGcGUc -3'
miRNA:   3'- gUUUGC-GCG-GCAUGUUUGCGUGC-CAc -5'
22940 5' -51.7 NC_005137.2 + 28043 0.66 0.981183
Target:  5'- uCGAACGUGgCGcgACGcGCGCugGGa- -3'
miRNA:   3'- -GUUUGCGCgGCa-UGUuUGCGugCCac -5'
22940 5' -51.7 NC_005137.2 + 28074 0.7 0.892556
Target:  5'- cCAGACG-GCUGUACAcGCaGCGCGGc- -3'
miRNA:   3'- -GUUUGCgCGGCAUGUuUG-CGUGCCac -5'
22940 5' -51.7 NC_005137.2 + 30014 0.69 0.918222
Target:  5'- uUAAGCGCGgCGUugAgaAGCGCGCGa-- -3'
miRNA:   3'- -GUUUGCGCgGCAugU--UUGCGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 31858 0.66 0.978932
Target:  5'- gCGAACGUGCacacgucgGUGCGAccgcacaaccACGCGgCGGUGu -3'
miRNA:   3'- -GUUUGCGCGg-------CAUGUU----------UGCGU-GCCAC- -5'
22940 5' -51.7 NC_005137.2 + 32351 0.66 0.981183
Target:  5'- cCAAACGcCGCCGUGCGccGAC-CGCGu-- -3'
miRNA:   3'- -GUUUGC-GCGGCAUGU--UUGcGUGCcac -5'
22940 5' -51.7 NC_005137.2 + 32878 0.69 0.924002
Target:  5'- -cAACGCG-CGUACGacGACGCgguagccggcgGCGGUGa -3'
miRNA:   3'- guUUGCGCgGCAUGU--UUGCG-----------UGCCAC- -5'
22940 5' -51.7 NC_005137.2 + 33028 0.68 0.95331
Target:  5'- --cGCGuCGUCGUACGcGCGUugGGa- -3'
miRNA:   3'- guuUGC-GCGGCAUGUuUGCGugCCac -5'
22940 5' -51.7 NC_005137.2 + 34471 0.69 0.912185
Target:  5'- -cGACGCGCaaUugGAACGCaaacACGGUGu -3'
miRNA:   3'- guUUGCGCGgcAugUUUGCG----UGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.