Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 63056 | 1.11 | 0.004705 |
Target: 5'- uUUAGUCUAAACACACCGCCGCUCACCa -3' miRNA: 3'- -AAUCAGAUUUGUGUGGCGGCGAGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 176 | 0.79 | 0.427676 |
Target: 5'- -gAGUUUGcgccuGACGCGCCGCUGUUCACUg -3' miRNA: 3'- aaUCAGAU-----UUGUGUGGCGGCGAGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 130188 | 0.79 | 0.437089 |
Target: 5'- cUGGUgUAAACGUGCCGCCGC-CACCu -3' miRNA: 3'- aAUCAgAUUUGUGUGGCGGCGaGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 33234 | 0.77 | 0.547531 |
Target: 5'- -cAGUUUA---ACGCCGCCGaCUCACCg -3' miRNA: 3'- aaUCAGAUuugUGUGGCGGC-GAGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 125143 | 0.74 | 0.697281 |
Target: 5'- --cGUCUugacAAUGCACCGCCGCUgACa -3' miRNA: 3'- aauCAGAu---UUGUGUGGCGGCGAgUGg -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 55655 | 0.74 | 0.718333 |
Target: 5'- -aAGUUUAAGCuaaugucguaGCACuCGCCGUUCACUa -3' miRNA: 3'- aaUCAGAUUUG----------UGUG-GCGGCGAGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 32357 | 0.73 | 0.75937 |
Target: 5'- --cGUCUGccaaACGCCGCCGUgCGCCg -3' miRNA: 3'- aauCAGAUuug-UGUGGCGGCGaGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 108786 | 0.72 | 0.788875 |
Target: 5'- cUUGGUCgcGugGCACCGucaCCGC-CACCa -3' miRNA: 3'- -AAUCAGauUugUGUGGC---GGCGaGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 11788 | 0.71 | 0.851796 |
Target: 5'- ----cCUAAACGCGCCGCCgaGCUCGgUg -3' miRNA: 3'- aaucaGAUUUGUGUGGCGG--CGAGUgG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 69431 | 0.71 | 0.859971 |
Target: 5'- --cGcCUAAACGCGCCGCgacCGCgcaCGCCg -3' miRNA: 3'- aauCaGAUUUGUGUGGCG---GCGa--GUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 100206 | 0.7 | 0.875629 |
Target: 5'- -aAGcaugCUGAACGCGCCGCgCGC-CGCg -3' miRNA: 3'- aaUCa---GAUUUGUGUGGCG-GCGaGUGg -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 60377 | 0.7 | 0.882364 |
Target: 5'- -aGGUCUGuGACcaaggaaACGCUGCaGCUCACCa -3' miRNA: 3'- aaUCAGAU-UUG-------UGUGGCGgCGAGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 104702 | 0.7 | 0.897296 |
Target: 5'- -gAGUCc-AGCGCGCCGCCGUUgUACg -3' miRNA: 3'- aaUCAGauUUGUGUGGCGGCGA-GUGg -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 93560 | 0.69 | 0.91047 |
Target: 5'- -aAGUUUAAACGCAacgCGCCGUcgUCGCa -3' miRNA: 3'- aaUCAGAUUUGUGUg--GCGGCG--AGUGg -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 35560 | 0.69 | 0.91047 |
Target: 5'- --uGUCaAGacACGCACCGCCGg-CGCCa -3' miRNA: 3'- aauCAGaUU--UGUGUGGCGGCgaGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 128300 | 0.69 | 0.916059 |
Target: 5'- -aAGUC-AAACACGacuugugcuuaauUCGCCGC-CACCg -3' miRNA: 3'- aaUCAGaUUUGUGU-------------GGCGGCGaGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 72068 | 0.69 | 0.922599 |
Target: 5'- -gGGUCgacuuGCACcgaAUCGCUGCUCugCg -3' miRNA: 3'- aaUCAGauu--UGUG---UGGCGGCGAGugG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 63288 | 0.68 | 0.938807 |
Target: 5'- -cGGUCU-----CGCCGUCGCUCGCg -3' miRNA: 3'- aaUCAGAuuuguGUGGCGGCGAGUGg -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 81619 | 0.68 | 0.952654 |
Target: 5'- -gGGUCgugcACACGCCGgaaCGUUCACUc -3' miRNA: 3'- aaUCAGauu-UGUGUGGCg--GCGAGUGG- -5' |
|||||||
22943 | 5' | -51.2 | NC_005137.2 | + | 63170 | 0.68 | 0.952654 |
Target: 5'- -aAG-CUugccGACACGCCGgCGCcgCACCa -3' miRNA: 3'- aaUCaGAu---UUGUGUGGCgGCGa-GUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home