miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22943 5' -51.2 NC_005137.2 + 31673 0.66 0.979076
Target:  5'- aUAG-C-GGACgACACCGCCGCgugguugugcggucgCACCg -3'
miRNA:   3'- aAUCaGaUUUG-UGUGGCGGCGa--------------GUGG- -5'
22943 5' -51.2 NC_005137.2 + 93200 0.68 0.956757
Target:  5'- -cAGUCgaaaauACACACCGUCcacCUCAUCa -3'
miRNA:   3'- aaUCAGauu---UGUGUGGCGGc--GAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 95483 0.68 0.956757
Target:  5'- -cGGUCggauGCGCGCCGCacgggCGCaUCGCUg -3'
miRNA:   3'- aaUCAGauu-UGUGUGGCG-----GCG-AGUGG- -5'
22943 5' -51.2 NC_005137.2 + 37428 0.67 0.96422
Target:  5'- --cGUUUGGAUcaGCgugauuGCCGCCGCgCACCa -3'
miRNA:   3'- aauCAGAUUUG--UG------UGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 129653 0.67 0.96422
Target:  5'- --cGUUUcgaccGACACguuGCCGCCGC-CGCCa -3'
miRNA:   3'- aauCAGAu----UUGUG---UGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 88463 0.67 0.970732
Target:  5'- aUAGUUgAGACugG-CGCgGUUCACCg -3'
miRNA:   3'- aAUCAGaUUUGugUgGCGgCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 116634 0.66 0.976347
Target:  5'- --uGUgcGAGCGCACCGCCGUggACa -3'
miRNA:   3'- aauCAgaUUUGUGUGGCGGCGagUGg -5'
22943 5' -51.2 NC_005137.2 + 130254 0.66 0.976347
Target:  5'- ------cAAACGUGCCGCCGC-CACCg -3'
miRNA:   3'- aaucagaUUUGUGUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 104448 0.66 0.978838
Target:  5'- -cAGUC--GACACGCCGCag--CGCCa -3'
miRNA:   3'- aaUCAGauUUGUGUGGCGgcgaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 81619 0.68 0.952654
Target:  5'- -gGGUCgugcACACGCCGgaaCGUUCACUc -3'
miRNA:   3'- aaUCAGauu-UGUGUGGCg--GCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 95866 0.68 0.952654
Target:  5'- --uGUUUAAucgGCACACCGCCGa-CACg -3'
miRNA:   3'- aauCAGAUU---UGUGUGGCGGCgaGUGg -5'
22943 5' -51.2 NC_005137.2 + 63288 0.68 0.938807
Target:  5'- -cGGUCU-----CGCCGUCGCUCGCg -3'
miRNA:   3'- aaUCAGAuuuguGUGGCGGCGAGUGg -5'
22943 5' -51.2 NC_005137.2 + 130188 0.79 0.437089
Target:  5'- cUGGUgUAAACGUGCCGCCGC-CACCu -3'
miRNA:   3'- aAUCAgAUUUGUGUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 33234 0.77 0.547531
Target:  5'- -cAGUUUA---ACGCCGCCGaCUCACCg -3'
miRNA:   3'- aaUCAGAUuugUGUGGCGGC-GAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 125143 0.74 0.697281
Target:  5'- --cGUCUugacAAUGCACCGCCGCUgACa -3'
miRNA:   3'- aauCAGAu---UUGUGUGGCGGCGAgUGg -5'
22943 5' -51.2 NC_005137.2 + 55655 0.74 0.718333
Target:  5'- -aAGUUUAAGCuaaugucguaGCACuCGCCGUUCACUa -3'
miRNA:   3'- aaUCAGAUUUG----------UGUG-GCGGCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 104702 0.7 0.897296
Target:  5'- -gAGUCc-AGCGCGCCGCCGUUgUACg -3'
miRNA:   3'- aaUCAGauUUGUGUGGCGGCGA-GUGg -5'
22943 5' -51.2 NC_005137.2 + 35560 0.69 0.91047
Target:  5'- --uGUCaAGacACGCACCGCCGg-CGCCa -3'
miRNA:   3'- aauCAGaUU--UGUGUGGCGGCgaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 93560 0.69 0.91047
Target:  5'- -aAGUUUAAACGCAacgCGCCGUcgUCGCa -3'
miRNA:   3'- aaUCAGAUUUGUGUg--GCGGCG--AGUGg -5'
22943 5' -51.2 NC_005137.2 + 128300 0.69 0.916059
Target:  5'- -aAGUC-AAACACGacuugugcuuaauUCGCCGC-CACCg -3'
miRNA:   3'- aaUCAGaUUUGUGU-------------GGCGGCGaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.