miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22943 5' -51.2 NC_005137.2 + 176 0.79 0.427676
Target:  5'- -gAGUUUGcgccuGACGCGCCGCUGUUCACUg -3'
miRNA:   3'- aaUCAGAU-----UUGUGUGGCGGCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 7105 0.67 0.96422
Target:  5'- -cGGUCUuGACACgACCaCCGCUuCGCa -3'
miRNA:   3'- aaUCAGAuUUGUG-UGGcGGCGA-GUGg -5'
22943 5' -51.2 NC_005137.2 + 8806 0.66 0.981129
Target:  5'- ----aCUGAaauuGCAC-CCGCgGCUCGCUa -3'
miRNA:   3'- aaucaGAUU----UGUGuGGCGgCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 11788 0.71 0.851796
Target:  5'- ----cCUAAACGCGCCGCCgaGCUCGgUg -3'
miRNA:   3'- aaucaGAUUUGUGUGGCGG--CGAGUgG- -5'
22943 5' -51.2 NC_005137.2 + 12441 0.66 0.976347
Target:  5'- aUGGUUUAaucAACGCGCCGUC-CUuaacCACCg -3'
miRNA:   3'- aAUCAGAU---UUGUGUGGCGGcGA----GUGG- -5'
22943 5' -51.2 NC_005137.2 + 14377 0.67 0.96422
Target:  5'- -aAGUCUGAAUGCGCCcgacgguccaCCGCaUACCg -3'
miRNA:   3'- aaUCAGAUUUGUGUGGc---------GGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 16756 0.66 0.986894
Target:  5'- aUUAGUCga-----GCCGCCGCgCAUCa -3'
miRNA:   3'- -AAUCAGauuugugUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 16853 0.66 0.983229
Target:  5'- --uGUUUGAugACACCGCguUGCUgCACg -3'
miRNA:   3'- aauCAGAUUugUGUGGCG--GCGA-GUGg -5'
22943 5' -51.2 NC_005137.2 + 27466 0.66 0.978838
Target:  5'- ----aCUGcccaaaACGCCGCCGC-CACCg -3'
miRNA:   3'- aaucaGAUuug---UGUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 31673 0.66 0.979076
Target:  5'- aUAG-C-GGACgACACCGCCGCgugguugugcggucgCACCg -3'
miRNA:   3'- aAUCaGaUUUG-UGUGGCGGCGa--------------GUGG- -5'
22943 5' -51.2 NC_005137.2 + 32357 0.73 0.75937
Target:  5'- --cGUCUGccaaACGCCGCCGUgCGCCg -3'
miRNA:   3'- aauCAGAUuug-UGUGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 33234 0.77 0.547531
Target:  5'- -cAGUUUA---ACGCCGCCGaCUCACCg -3'
miRNA:   3'- aaUCAGAUuugUGUGGCGGC-GAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 35560 0.69 0.91047
Target:  5'- --uGUCaAGacACGCACCGCCGg-CGCCa -3'
miRNA:   3'- aauCAGaUU--UGUGUGGCGGCgaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 37428 0.67 0.96422
Target:  5'- --cGUUUGGAUcaGCgugauuGCCGCCGCgCACCa -3'
miRNA:   3'- aauCAGAUUUG--UG------UGGCGGCGaGUGG- -5'
22943 5' -51.2 NC_005137.2 + 38625 0.66 0.983229
Target:  5'- aUAGUUuacgcuuuUAAACGuCACCGCUGCccCAUCg -3'
miRNA:   3'- aAUCAG--------AUUUGU-GUGGCGGCGa-GUGG- -5'
22943 5' -51.2 NC_005137.2 + 41317 0.66 0.976347
Target:  5'- --cGcCUAc-CACACCGCCGUcugCGCCc -3'
miRNA:   3'- aauCaGAUuuGUGUGGCGGCGa--GUGG- -5'
22943 5' -51.2 NC_005137.2 + 46651 0.66 0.984018
Target:  5'- -cGGcgCUAAGgGCAgCGCCGCUuuaaucgaaagcacgCGCCa -3'
miRNA:   3'- aaUCa-GAUUUgUGUgGCGGCGA---------------GUGG- -5'
22943 5' -51.2 NC_005137.2 + 55655 0.74 0.718333
Target:  5'- -aAGUUUAAGCuaaugucguaGCACuCGCCGUUCACUa -3'
miRNA:   3'- aaUCAGAUUUG----------UGUG-GCGGCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 60377 0.7 0.882364
Target:  5'- -aGGUCUGuGACcaaggaaACGCUGCaGCUCACCa -3'
miRNA:   3'- aaUCAGAU-UUG-------UGUGGCGgCGAGUGG- -5'
22943 5' -51.2 NC_005137.2 + 63056 1.11 0.004705
Target:  5'- uUUAGUCUAAACACACCGCCGCUCACCa -3'
miRNA:   3'- -AAUCAGAUUUGUGUGGCGGCGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.