miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22946 3' -57.3 NC_005137.2 + 67529 0.66 0.815283
Target:  5'- cGUUGAUGUCAACGCcgcgaGGCGgCACa--- -3'
miRNA:   3'- -UAACUGCGGUUGCG-----CCGCgGUGacag -5'
22946 3' -57.3 NC_005137.2 + 106286 0.66 0.815283
Target:  5'- --cGAUGCCcca-CGGCGCCAaUGUCu -3'
miRNA:   3'- uaaCUGCGGuugcGCCGCGGUgACAG- -5'
22946 3' -57.3 NC_005137.2 + 48142 0.66 0.815283
Target:  5'- --cGugGCC---GCGGUGCCAUUGa- -3'
miRNA:   3'- uaaCugCGGuugCGCCGCGGUGACag -5'
22946 3' -57.3 NC_005137.2 + 130353 0.66 0.806394
Target:  5'- -gUGGCGCUacagGugGCGGCGgCAC-GUUu -3'
miRNA:   3'- uaACUGCGG----UugCGCCGCgGUGaCAG- -5'
22946 3' -57.3 NC_005137.2 + 63004 0.66 0.806394
Target:  5'- --gGAC-CCAuggUGCGGCGCCgGCgUGUCg -3'
miRNA:   3'- uaaCUGcGGUu--GCGCCGCGG-UG-ACAG- -5'
22946 3' -57.3 NC_005137.2 + 129158 0.66 0.806394
Target:  5'- --aGGCGCCGcgACGaCGGUG-CACUcGUCg -3'
miRNA:   3'- uaaCUGCGGU--UGC-GCCGCgGUGA-CAG- -5'
22946 3' -57.3 NC_005137.2 + 115137 0.66 0.806394
Target:  5'- --gGGCGgCAcgugAC-CGGCGgCACUGUCg -3'
miRNA:   3'- uaaCUGCgGU----UGcGCCGCgGUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 64120 0.66 0.806394
Target:  5'- cAUUGGC-CCAuCGCGGCGUCAaacgUGUa -3'
miRNA:   3'- -UAACUGcGGUuGCGCCGCGGUg---ACAg -5'
22946 3' -57.3 NC_005137.2 + 28208 0.66 0.806394
Target:  5'- -cUGGCGCauccCAGCGCGcgucGCGCCAC-GUUc -3'
miRNA:   3'- uaACUGCG----GUUGCGC----CGCGGUGaCAG- -5'
22946 3' -57.3 NC_005137.2 + 31571 0.66 0.797343
Target:  5'- --cGGCGUCGACGUGcaGCuGCCACgGUUg -3'
miRNA:   3'- uaaCUGCGGUUGCGC--CG-CGGUGaCAG- -5'
22946 3' -57.3 NC_005137.2 + 47386 0.66 0.797343
Target:  5'- -gUGGCGgCAAU-CaGCGCCugUGUCa -3'
miRNA:   3'- uaACUGCgGUUGcGcCGCGGugACAG- -5'
22946 3' -57.3 NC_005137.2 + 69165 0.66 0.778789
Target:  5'- -aUGcGCGCCAGaaUGGCGUCGCUGcCa -3'
miRNA:   3'- uaAC-UGCGGUUgcGCCGCGGUGACaG- -5'
22946 3' -57.3 NC_005137.2 + 81590 0.67 0.769305
Target:  5'- cUUGACGCgUGACGCGGCaGCaguaaGCaggGUCg -3'
miRNA:   3'- uAACUGCG-GUUGCGCCG-CGg----UGa--CAG- -5'
22946 3' -57.3 NC_005137.2 + 46823 0.67 0.759695
Target:  5'- -cUGGCGCguGCuuucgauuaaaGCGGCgcugcccuuagcGCCGCUGUCc -3'
miRNA:   3'- uaACUGCGguUG-----------CGCCG------------CGGUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 39650 0.67 0.749969
Target:  5'- uAUUGcUGCCAGgcuaaGCGGCGCCGCa--- -3'
miRNA:   3'- -UAACuGCGGUUg----CGCCGCGGUGacag -5'
22946 3' -57.3 NC_005137.2 + 38522 0.67 0.740136
Target:  5'- gGUUG-CGCauauuUggUGCGGUcaacGCCACUGUCa -3'
miRNA:   3'- -UAACuGCG-----GuuGCGCCG----CGGUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 17022 0.67 0.730206
Target:  5'- aAUUGGCGCaucucgugcagCAACGCGGUGUCAUcaaacacguUGUUg -3'
miRNA:   3'- -UAACUGCG-----------GUUGCGCCGCGGUG---------ACAG- -5'
22946 3' -57.3 NC_005137.2 + 114252 0.68 0.710094
Target:  5'- --aGACGC--ACGCGGCGCUcggcgaACUGaUCa -3'
miRNA:   3'- uaaCUGCGguUGCGCCGCGG------UGAC-AG- -5'
22946 3' -57.3 NC_005137.2 + 46610 0.68 0.699932
Target:  5'- uUUGACGUCGGCGUGcauGUGCCACa--- -3'
miRNA:   3'- uAACUGCGGUUGCGC---CGCGGUGacag -5'
22946 3' -57.3 NC_005137.2 + 63967 0.68 0.68971
Target:  5'- uUUGACGCC-GCGauGgGCCAaUGUCg -3'
miRNA:   3'- uAACUGCGGuUGCgcCgCGGUgACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.