Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22949 | 5' | -56.3 | NC_005137.2 | + | 95633 | 0.66 | 0.878392 |
Target: 5'- -aGUCGuuuuuuccGCGUGCGCCGuGCGcCGAc- -3' miRNA: 3'- ugCAGUu-------UGCGCGCGGC-CGCuGCUuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 48915 | 0.66 | 0.878392 |
Target: 5'- cGCGUCcAACGauCGCGCCgccuuguucGGCGACa--- -3' miRNA: 3'- -UGCAGuUUGC--GCGCGG---------CCGCUGcuuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 100144 | 0.66 | 0.878392 |
Target: 5'- gGCGguugguGCGUGCGCUgcuGGCGcACGAAGa -3' miRNA: 3'- -UGCaguu--UGCGCGCGG---CCGC-UGCUUU- -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 96789 | 0.66 | 0.878392 |
Target: 5'- gUGUCAAAgGUGCGUCaGCGcCGAu- -3' miRNA: 3'- uGCAGUUUgCGCGCGGcCGCuGCUuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 98356 | 0.66 | 0.87767 |
Target: 5'- cCGUCAcgcuUGUGCGCCGguuuggcgccgucGCGACGGGc -3' miRNA: 3'- uGCAGUuu--GCGCGCGGC-------------CGCUGCUUu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 46163 | 0.66 | 0.871076 |
Target: 5'- gUGUCGGACGUGCGCaucaacaaGuGCGACa--- -3' miRNA: 3'- uGCAGUUUGCGCGCGg-------C-CGCUGcuuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 42826 | 0.66 | 0.871076 |
Target: 5'- cCGUCGAuUGCGCGCUuGGCGuCGc-- -3' miRNA: 3'- uGCAGUUuGCGCGCGG-CCGCuGCuuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 28046 | 0.66 | 0.86354 |
Target: 5'- aACGUgGcgcGACGCGCGCUGGgaugcgccaGACGGc- -3' miRNA: 3'- -UGCAgU---UUGCGCGCGGCCg--------CUGCUuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 114820 | 0.66 | 0.86354 |
Target: 5'- uCGUCAGAUGUcauagGCgGCUGGCGcACGAu- -3' miRNA: 3'- uGCAGUUUGCG-----CG-CGGCCGC-UGCUuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 59503 | 0.66 | 0.86354 |
Target: 5'- cCGcCAGACGa--GCCGGCuGACGAGu -3' miRNA: 3'- uGCaGUUUGCgcgCGGCCG-CUGCUUu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 114260 | 0.66 | 0.855792 |
Target: 5'- aGCGgugCAGACGCacgcgGCGCuCGGCGAacUGAu- -3' miRNA: 3'- -UGCa--GUUUGCG-----CGCG-GCCGCU--GCUuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 42068 | 0.66 | 0.855792 |
Target: 5'- cGCGUacauuuuaaaaCAAGCGUGC-CCGGCGgaaacagacaGCGAAAg -3' miRNA: 3'- -UGCA-----------GUUUGCGCGcGGCCGC----------UGCUUU- -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 100228 | 0.66 | 0.855792 |
Target: 5'- cACGU---GCGCGCGCC-GCGGCa--- -3' miRNA: 3'- -UGCAguuUGCGCGCGGcCGCUGcuuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 123345 | 0.66 | 0.855792 |
Target: 5'- gACGccaCAAACGaCGUGCCGgGCGGCa--- -3' miRNA: 3'- -UGCa--GUUUGC-GCGCGGC-CGCUGcuuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 104235 | 0.66 | 0.847836 |
Target: 5'- gGCGUCAcAACGa--GCCGGCcagcacGACGAAGg -3' miRNA: 3'- -UGCAGU-UUGCgcgCGGCCG------CUGCUUU- -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 76124 | 0.66 | 0.847836 |
Target: 5'- cCGUgCAccAACGCGCGCCGcGUcACGAc- -3' miRNA: 3'- uGCA-GU--UUGCGCGCGGC-CGcUGCUuu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 130854 | 0.66 | 0.842967 |
Target: 5'- cGCGUUGGACGCGCaGCCcGCGccugaauuguacgccGCGGAc -3' miRNA: 3'- -UGCAGUUUGCGCG-CGGcCGC---------------UGCUUu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 55577 | 0.66 | 0.839681 |
Target: 5'- gGCGgacgCGGGCG-GCGCCGugcGCGugGAGc -3' miRNA: 3'- -UGCa---GUUUGCgCGCGGC---CGCugCUUu -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 63273 | 0.66 | 0.839681 |
Target: 5'- --uUCAAGC-CGCGaCCGGCG-CGAAGc -3' miRNA: 3'- ugcAGUUUGcGCGC-GGCCGCuGCUUU- -5' |
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22949 | 5' | -56.3 | NC_005137.2 | + | 75963 | 0.67 | 0.8228 |
Target: 5'- uUGUCGugacgcGGCGCGCGuuGGUGcACGGc- -3' miRNA: 3'- uGCAGU------UUGCGCGCggCCGC-UGCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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