miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22949 5' -56.3 NC_005137.2 + 114820 0.66 0.86354
Target:  5'- uCGUCAGAUGUcauagGCgGCUGGCGcACGAu- -3'
miRNA:   3'- uGCAGUUUGCG-----CG-CGGCCGC-UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 108146 0.68 0.768181
Target:  5'- uCGUCGGGCG-GCGgCGGCGuCGGu- -3'
miRNA:   3'- uGCAGUUUGCgCGCgGCCGCuGCUuu -5'
22949 5' -56.3 NC_005137.2 + 106389 0.68 0.777647
Target:  5'- aACGUCAuguuuGACGaCGCGUCGGUcauGugGAu- -3'
miRNA:   3'- -UGCAGU-----UUGC-GCGCGGCCG---CugCUuu -5'
22949 5' -56.3 NC_005137.2 + 71362 0.67 0.796171
Target:  5'- uCGUCGGcCGCGUugacuGUCGGCGACGc-- -3'
miRNA:   3'- uGCAGUUuGCGCG-----CGGCCGCUGCuuu -5'
22949 5' -56.3 NC_005137.2 + 71980 0.67 0.80521
Target:  5'- gACGUaCAuGCGCguaGCGCaCGGCGACa--- -3'
miRNA:   3'- -UGCA-GUuUGCG---CGCG-GCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 110578 0.67 0.814089
Target:  5'- uGCGUCuuGGCGCGCccaucCUGuGCGACGAc- -3'
miRNA:   3'- -UGCAGu-UUGCGCGc----GGC-CGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 75963 0.67 0.8228
Target:  5'- uUGUCGugacgcGGCGCGCGuuGGUGcACGGc- -3'
miRNA:   3'- uGCAGU------UUGCGCGCggCCGC-UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 130854 0.66 0.842967
Target:  5'- cGCGUUGGACGCGCaGCCcGCGccugaauuguacgccGCGGAc -3'
miRNA:   3'- -UGCAGUUUGCGCG-CGGcCGC---------------UGCUUu -5'
22949 5' -56.3 NC_005137.2 + 42068 0.66 0.855792
Target:  5'- cGCGUacauuuuaaaaCAAGCGUGC-CCGGCGgaaacagacaGCGAAAg -3'
miRNA:   3'- -UGCA-----------GUUUGCGCGcGGCCGC----------UGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 95504 0.68 0.758592
Target:  5'- gGCGcaUCGcuGACGUG-GCCGGUGGCGAc- -3'
miRNA:   3'- -UGC--AGU--UUGCGCgCGGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 71094 0.68 0.748887
Target:  5'- aAUGUCGGGCGgaGCGuuGGCGGCc--- -3'
miRNA:   3'- -UGCAGUUUGCg-CGCggCCGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 78660 0.7 0.668281
Target:  5'- gUGUCAAAUGCGUGUCGGCuaauaGCGGc- -3'
miRNA:   3'- uGCAGUUUGCGCGCGGCCGc----UGCUuu -5'
22949 5' -56.3 NC_005137.2 + 124954 0.77 0.308241
Target:  5'- uGCGaUGAACGCgGCGCCGGUGAUGggGc -3'
miRNA:   3'- -UGCaGUUUGCG-CGCGGCCGCUGCuuU- -5'
22949 5' -56.3 NC_005137.2 + 61364 0.76 0.345676
Target:  5'- uGCGUCAAAUGgGCgGCCGGCGAguUGAu- -3'
miRNA:   3'- -UGCAGUUUGCgCG-CGGCCGCU--GCUuu -5'
22949 5' -56.3 NC_005137.2 + 67549 0.75 0.386262
Target:  5'- gGCGgcaCAAACGCGCGCCGaGCGG-GAAc -3'
miRNA:   3'- -UGCa--GUUUGCGCGCGGC-CGCUgCUUu -5'
22949 5' -56.3 NC_005137.2 + 32883 0.74 0.420916
Target:  5'- cGCGUaCGacGACGCGguaGCCGGCGGCGGu- -3'
miRNA:   3'- -UGCA-GU--UUGCGCg--CGGCCGCUGCUuu -5'
22949 5' -56.3 NC_005137.2 + 97969 0.74 0.420916
Target:  5'- cGCGUCAuuguaggcaaAACGgGCGCgCGGCGugGGu- -3'
miRNA:   3'- -UGCAGU----------UUGCgCGCG-GCCGCugCUuu -5'
22949 5' -56.3 NC_005137.2 + 5061 0.73 0.457382
Target:  5'- gACGUCGuGCGUGCGCCG-CGACa--- -3'
miRNA:   3'- -UGCAGUuUGCGCGCGGCcGCUGcuuu -5'
22949 5' -56.3 NC_005137.2 + 26682 0.71 0.595981
Target:  5'- cACGUgCGAACGUuugaugGCGCugaaCGGCGGCGAAGa -3'
miRNA:   3'- -UGCA-GUUUGCG------CGCG----GCCGCUGCUUU- -5'
22949 5' -56.3 NC_005137.2 + 79655 0.7 0.656942
Target:  5'- cGCGUUAAACacgguuugugcagGCGCGgCGGCgGACGAc- -3'
miRNA:   3'- -UGCAGUUUG-------------CGCGCgGCCG-CUGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.