miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22955 5' -54 NC_005137.2 + 93506 1.11 0.002679
Target:  5'- uUGUCGUAGCCGACGGCGCAAAUGCACg -3'
miRNA:   3'- -ACAGCAUCGGCUGCCGCGUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 95651 0.81 0.243472
Target:  5'- cGcCGUGcGCCGACGG-GCAAGUGCGCc -3'
miRNA:   3'- aCaGCAU-CGGCUGCCgCGUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 1653 0.75 0.4635
Target:  5'- cGUCGgcGCCGcGCGGCG-GAAUGUACc -3'
miRNA:   3'- aCAGCauCGGC-UGCCGCgUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 70075 0.75 0.4635
Target:  5'- -uUUGUGGCCGACGGuUGCGug-GCGCa -3'
miRNA:   3'- acAGCAUCGGCUGCC-GCGUuuaCGUG- -5'
22955 5' -54 NC_005137.2 + 28047 0.75 0.502598
Target:  5'- --aCGUGGCgCGACGcGCGCugGGAUGCGCc -3'
miRNA:   3'- acaGCAUCG-GCUGC-CGCG--UUUACGUG- -5'
22955 5' -54 NC_005137.2 + 103799 0.75 0.511595
Target:  5'- uUGUUGUAGCaguugcuggugugCGGCGGCGgGuuGGUGCACg -3'
miRNA:   3'- -ACAGCAUCG-------------GCUGCCGCgU--UUACGUG- -5'
22955 5' -54 NC_005137.2 + 45448 0.74 0.522681
Target:  5'- ---aGUAGCgGGCGGCGCAGcacGCGCa -3'
miRNA:   3'- acagCAUCGgCUGCCGCGUUua-CGUG- -5'
22955 5' -54 NC_005137.2 + 56666 0.74 0.522681
Target:  5'- -cUCGUGcuuGCCGACGGCGCu-GUGgACg -3'
miRNA:   3'- acAGCAU---CGGCUGCCGCGuuUACgUG- -5'
22955 5' -54 NC_005137.2 + 108144 0.74 0.553358
Target:  5'- gGUCGUcgGGCggCGGCGGCGUcgguAUGCGCg -3'
miRNA:   3'- aCAGCA--UCG--GCUGCCGCGuu--UACGUG- -5'
22955 5' -54 NC_005137.2 + 104604 0.74 0.563707
Target:  5'- aGUCGUGGCgCuGCGGCGUgucgacugccaAGAUGUACa -3'
miRNA:   3'- aCAGCAUCG-GcUGCCGCG-----------UUUACGUG- -5'
22955 5' -54 NC_005137.2 + 125059 0.73 0.573064
Target:  5'- cGgcgCGgcGCCGgaucugaACGGCGCAAagGCACa -3'
miRNA:   3'- aCa--GCauCGGC-------UGCCGCGUUuaCGUG- -5'
22955 5' -54 NC_005137.2 + 16753 0.72 0.62661
Target:  5'- aGUCG-AGCCG-CcGCGCAucAAUGCGCg -3'
miRNA:   3'- aCAGCaUCGGCuGcCGCGU--UUACGUG- -5'
22955 5' -54 NC_005137.2 + 10882 0.72 0.637157
Target:  5'- aGUgcUGGCCGACGcguGCGCGAugcgGUGCACg -3'
miRNA:   3'- aCAgcAUCGGCUGC---CGCGUU----UACGUG- -5'
22955 5' -54 NC_005137.2 + 75963 0.72 0.6477
Target:  5'- uUGUCGUGaCgCGGCGcGCGUuGGUGCACg -3'
miRNA:   3'- -ACAGCAUcG-GCUGC-CGCGuUUACGUG- -5'
22955 5' -54 NC_005137.2 + 75125 0.72 0.658229
Target:  5'- aGUCGgcGUCGuCGGCGCGAuuguUGgACg -3'
miRNA:   3'- aCAGCauCGGCuGCCGCGUUu---ACgUG- -5'
22955 5' -54 NC_005137.2 + 4608 0.71 0.700031
Target:  5'- --aCGUuauuaCGACGGCGCGAagGUGCGCg -3'
miRNA:   3'- acaGCAucg--GCUGCCGCGUU--UACGUG- -5'
22955 5' -54 NC_005137.2 + 32198 0.71 0.700031
Target:  5'- gGUCGgcGCaCGGCGGCGUuug-GCAg -3'
miRNA:   3'- aCAGCauCG-GCUGCCGCGuuuaCGUg -5'
22955 5' -54 NC_005137.2 + 32898 0.71 0.707265
Target:  5'- ---gGUAGCCGGCGGCGguGAcaaaacucgcaacaUGCAg -3'
miRNA:   3'- acagCAUCGGCUGCCGCguUU--------------ACGUg -5'
22955 5' -54 NC_005137.2 + 95513 0.71 0.720608
Target:  5'- cUGaCGUGGCCGGUGGCGacu-UGCGCu -3'
miRNA:   3'- -ACaGCAUCGGCUGCCGCguuuACGUG- -5'
22955 5' -54 NC_005137.2 + 93678 0.71 0.73078
Target:  5'- aGUUuucGGCCGACGcGUGCAuuUGCGCc -3'
miRNA:   3'- aCAGca-UCGGCUGC-CGCGUuuACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.