miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22955 5' -54 NC_005137.2 + 63902 0.67 0.901887
Target:  5'- cGUUGUauuugcgaugcuuGGCgGACGGUucGCAcgcGGUGCGCg -3'
miRNA:   3'- aCAGCA-------------UCGgCUGCCG--CGU---UUACGUG- -5'
22955 5' -54 NC_005137.2 + 95513 0.71 0.720608
Target:  5'- cUGaCGUGGCCGGUGGCGacu-UGCGCu -3'
miRNA:   3'- -ACaGCAUCGGCUGCCGCguuuACGUG- -5'
22955 5' -54 NC_005137.2 + 45676 0.69 0.817047
Target:  5'- --aCGUGGgCGGCGGCGCcaacgcGGAUGCu- -3'
miRNA:   3'- acaGCAUCgGCUGCCGCG------UUUACGug -5'
22955 5' -54 NC_005137.2 + 93669 0.69 0.817047
Target:  5'- ------cGCCGGCcGCGUAGAUGCGCa -3'
miRNA:   3'- acagcauCGGCUGcCGCGUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 3343 0.69 0.83535
Target:  5'- cUGUCG-GGCCGcGCGGUGCAAuacccggaagacgaGCGCa -3'
miRNA:   3'- -ACAGCaUCGGC-UGCCGCGUUua------------CGUG- -5'
22955 5' -54 NC_005137.2 + 108569 0.68 0.859188
Target:  5'- aUGUaCGUGaUCGGCGGCGCGcccGUGUGCu -3'
miRNA:   3'- -ACA-GCAUcGGCUGCCGCGUu--UACGUG- -5'
22955 5' -54 NC_005137.2 + 30792 0.68 0.866992
Target:  5'- uUGUCGUcGUCGACGcGCaccaGCAAcacguugggaguGUGCGCg -3'
miRNA:   3'- -ACAGCAuCGGCUGC-CG----CGUU------------UACGUG- -5'
22955 5' -54 NC_005137.2 + 116283 0.68 0.866992
Target:  5'- cGUUGUGGaaGACGGCcaGCAc--GCACg -3'
miRNA:   3'- aCAGCAUCggCUGCCG--CGUuuaCGUG- -5'
22955 5' -54 NC_005137.2 + 100074 0.67 0.889036
Target:  5'- -uUUGU-GCCG-CGGCGCGcg-GCACg -3'
miRNA:   3'- acAGCAuCGGCuGCCGCGUuuaCGUG- -5'
22955 5' -54 NC_005137.2 + 32898 0.71 0.707265
Target:  5'- ---gGUAGCCGGCGGCGguGAcaaaacucgcaacaUGCAg -3'
miRNA:   3'- acagCAUCGGCUGCCGCguUU--------------ACGUg -5'
22955 5' -54 NC_005137.2 + 32198 0.71 0.700031
Target:  5'- gGUCGgcGCaCGGCGGCGUuug-GCAg -3'
miRNA:   3'- aCAGCauCG-GCUGCCGCGuuuaCGUg -5'
22955 5' -54 NC_005137.2 + 75125 0.72 0.658229
Target:  5'- aGUCGgcGUCGuCGGCGCGAuuguUGgACg -3'
miRNA:   3'- aCAGCauCGGCuGCCGCGUUu---ACgUG- -5'
22955 5' -54 NC_005137.2 + 95651 0.81 0.243472
Target:  5'- cGcCGUGcGCCGACGG-GCAAGUGCGCc -3'
miRNA:   3'- aCaGCAU-CGGCUGCCgCGUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 28047 0.75 0.502598
Target:  5'- --aCGUGGCgCGACGcGCGCugGGAUGCGCc -3'
miRNA:   3'- acaGCAUCG-GCUGC-CGCG--UUUACGUG- -5'
22955 5' -54 NC_005137.2 + 103799 0.75 0.511595
Target:  5'- uUGUUGUAGCaguugcuggugugCGGCGGCGgGuuGGUGCACg -3'
miRNA:   3'- -ACAGCAUCG-------------GCUGCCGCgU--UUACGUG- -5'
22955 5' -54 NC_005137.2 + 45448 0.74 0.522681
Target:  5'- ---aGUAGCgGGCGGCGCAGcacGCGCa -3'
miRNA:   3'- acagCAUCGgCUGCCGCGUUua-CGUG- -5'
22955 5' -54 NC_005137.2 + 56666 0.74 0.522681
Target:  5'- -cUCGUGcuuGCCGACGGCGCu-GUGgACg -3'
miRNA:   3'- acAGCAU---CGGCUGCCGCGuuUACgUG- -5'
22955 5' -54 NC_005137.2 + 108144 0.74 0.553358
Target:  5'- gGUCGUcgGGCggCGGCGGCGUcgguAUGCGCg -3'
miRNA:   3'- aCAGCA--UCG--GCUGCCGCGuu--UACGUG- -5'
22955 5' -54 NC_005137.2 + 125059 0.73 0.573064
Target:  5'- cGgcgCGgcGCCGgaucugaACGGCGCAAagGCACa -3'
miRNA:   3'- aCa--GCauCGGC-------UGCCGCGUUuaCGUG- -5'
22955 5' -54 NC_005137.2 + 75963 0.72 0.6477
Target:  5'- uUGUCGUGaCgCGGCGcGCGUuGGUGCACg -3'
miRNA:   3'- -ACAGCAUcG-GCUGC-CGCGuUUACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.