miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22955 5' -54 NC_005137.2 + 1653 0.75 0.4635
Target:  5'- cGUCGgcGCCGcGCGGCG-GAAUGUACc -3'
miRNA:   3'- aCAGCauCGGC-UGCCGCgUUUACGUG- -5'
22955 5' -54 NC_005137.2 + 1989 0.66 0.926556
Target:  5'- gGUCGUuGCCG-CGuGCacaGCucGUGCACg -3'
miRNA:   3'- aCAGCAuCGGCuGC-CG---CGuuUACGUG- -5'
22955 5' -54 NC_005137.2 + 3343 0.69 0.83535
Target:  5'- cUGUCG-GGCCGcGCGGUGCAAuacccggaagacgaGCGCa -3'
miRNA:   3'- -ACAGCaUCGGC-UGCCGCGUUua------------CGUG- -5'
22955 5' -54 NC_005137.2 + 4388 0.66 0.926556
Target:  5'- --aCGUGucGCCGACcGaCGCAAuUGCACg -3'
miRNA:   3'- acaGCAU--CGGCUGcC-GCGUUuACGUG- -5'
22955 5' -54 NC_005137.2 + 4608 0.71 0.700031
Target:  5'- --aCGUuauuaCGACGGCGCGAagGUGCGCg -3'
miRNA:   3'- acaGCAucg--GCUGCCGCGUU--UACGUG- -5'
22955 5' -54 NC_005137.2 + 5233 0.67 0.902538
Target:  5'- aGUCGacgcGCCGucucaaugucGCGGCGCAc--GCACg -3'
miRNA:   3'- aCAGCau--CGGC----------UGCCGCGUuuaCGUG- -5'
22955 5' -54 NC_005137.2 + 10882 0.72 0.637157
Target:  5'- aGUgcUGGCCGACGcguGCGCGAugcgGUGCACg -3'
miRNA:   3'- aCAgcAUCGGCUGC---CGCGUU----UACGUG- -5'
22955 5' -54 NC_005137.2 + 12853 0.66 0.918609
Target:  5'- gGcCGUAGCC--CGGCGCAAucuggaucacggGCGCg -3'
miRNA:   3'- aCaGCAUCGGcuGCCGCGUUua----------CGUG- -5'
22955 5' -54 NC_005137.2 + 16753 0.72 0.62661
Target:  5'- aGUCG-AGCCG-CcGCGCAucAAUGCGCg -3'
miRNA:   3'- aCAGCaUCGGCuGcCGCGU--UUACGUG- -5'
22955 5' -54 NC_005137.2 + 23522 0.66 0.926556
Target:  5'- aGUCGUAGCCcuuuACGaGCcGCAcguAUGUGCa -3'
miRNA:   3'- aCAGCAUCGGc---UGC-CG-CGUu--UACGUG- -5'
22955 5' -54 NC_005137.2 + 24250 0.66 0.926556
Target:  5'- gUGcUCGccGCaaauGACGGUGCAAAauUGCACu -3'
miRNA:   3'- -AC-AGCauCGg---CUGCCGCGUUU--ACGUG- -5'
22955 5' -54 NC_005137.2 + 24837 0.67 0.889036
Target:  5'- aUGUCGUGaccaCGACGGCGguGGcgGCAa -3'
miRNA:   3'- -ACAGCAUcg--GCUGCCGCguUUa-CGUg -5'
22955 5' -54 NC_005137.2 + 27251 0.66 0.937045
Target:  5'- gGUCGUAGCCGuguuccuUGGCGUAcaauuccaguucAGUGUc- -3'
miRNA:   3'- aCAGCAUCGGCu------GCCGCGU------------UUACGug -5'
22955 5' -54 NC_005137.2 + 28047 0.75 0.502598
Target:  5'- --aCGUGGCgCGACGcGCGCugGGAUGCGCc -3'
miRNA:   3'- acaGCAUCG-GCUGC-CGCG--UUUACGUG- -5'
22955 5' -54 NC_005137.2 + 30792 0.68 0.866992
Target:  5'- uUGUCGUcGUCGACGcGCaccaGCAAcacguugggaguGUGCGCg -3'
miRNA:   3'- -ACAGCAuCGGCUGC-CG----CGUU------------UACGUG- -5'
22955 5' -54 NC_005137.2 + 31044 0.7 0.766577
Target:  5'- uUGUCuugaaGUGGCUG-CGGCGCAuuggcguucggucGUGCACg -3'
miRNA:   3'- -ACAG-----CAUCGGCuGCCGCGUu------------UACGUG- -5'
22955 5' -54 NC_005137.2 + 31581 0.67 0.902538
Target:  5'- --aCGUGGCCGACaucGCGaCAauGAUGCAa -3'
miRNA:   3'- acaGCAUCGGCUGc--CGC-GU--UUACGUg -5'
22955 5' -54 NC_005137.2 + 31798 0.66 0.94191
Target:  5'- aG-CGUGGUCG-CGuccGCGCGcGUGCACu -3'
miRNA:   3'- aCaGCAUCGGCuGC---CGCGUuUACGUG- -5'
22955 5' -54 NC_005137.2 + 32198 0.71 0.700031
Target:  5'- gGUCGgcGCaCGGCGGCGUuug-GCAg -3'
miRNA:   3'- aCAGCauCG-GCUGCCGCGuuuaCGUg -5'
22955 5' -54 NC_005137.2 + 32898 0.71 0.707265
Target:  5'- ---gGUAGCCGGCGGCGguGAcaaaacucgcaacaUGCAg -3'
miRNA:   3'- acagCAUCGGCUGCCGCguUU--------------ACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.