miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22957 5' -49.1 NC_005137.2 + 61042 0.66 0.9981
Target:  5'- cGGCGGu--CUUGuaaucguACGCGUUugcGCUGCa -3'
miRNA:   3'- cCCGUCuuuGAACu------UGUGCAA---CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 7679 0.66 0.9981
Target:  5'- aGGCAac-GCUuccaUGGGCACGUaaUGCCuGCg -3'
miRNA:   3'- cCCGUcuuUGA----ACUUGUGCA--ACGG-CG- -5'
22957 5' -49.1 NC_005137.2 + 52063 0.66 0.9981
Target:  5'- -cGCAuGAcGCga-AACGCGUUGUCGCa -3'
miRNA:   3'- ccCGU-CUuUGaacUUGUGCAACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 58863 0.66 0.9981
Target:  5'- --cCAGAAAacUGuGCACGgUGCCGCg -3'
miRNA:   3'- cccGUCUUUgaACuUGUGCaACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 110620 0.66 0.9981
Target:  5'- uGGCGGuuaguGACcccgUGuACGCGccgGCCGCg -3'
miRNA:   3'- cCCGUCu----UUGa---ACuUGUGCaa-CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 56225 0.66 0.997722
Target:  5'- cGGUAGugguuGCguuuUGGGgACGUgaUGCCGCa -3'
miRNA:   3'- cCCGUCuu---UGa---ACUUgUGCA--ACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 42410 0.66 0.996777
Target:  5'- cGGCGGugccccGCcgGGACACGUnauguguccGCCGCg -3'
miRNA:   3'- cCCGUCuu----UGaaCUUGUGCAa--------CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 118132 0.66 0.996777
Target:  5'- uGGCGGGugAGCUgcUGuuguuGC-CGUUGCUGCu -3'
miRNA:   3'- cCCGUCU--UUGA--ACu----UGuGCAACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 68776 0.67 0.99553
Target:  5'- uGGCGcGAAAaccgUGAAacUACGgUGCCGCg -3'
miRNA:   3'- cCCGU-CUUUga--ACUU--GUGCaACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 37398 0.67 0.994773
Target:  5'- --aCGGAAugUUGAAUAUGggguagcGCCGCg -3'
miRNA:   3'- cccGUCUUugAACUUGUGCaa-----CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 5453 0.67 0.993915
Target:  5'- uGGGCGGAAACUcGAGCGaGUcuagCGCa -3'
miRNA:   3'- -CCCGUCUUUGAaCUUGUgCAacg-GCG- -5'
22957 5' -49.1 NC_005137.2 + 85452 0.67 0.993915
Target:  5'- cGGCAcGA----UGAACACGguUUGCCGUu -3'
miRNA:   3'- cCCGU-CUuugaACUUGUGC--AACGGCG- -5'
22957 5' -49.1 NC_005137.2 + 24631 0.67 0.992948
Target:  5'- cGGGaaaaAAACUUGAuCACG--GCCGCa -3'
miRNA:   3'- -CCCguc-UUUGAACUuGUGCaaCGGCG- -5'
22957 5' -49.1 NC_005137.2 + 119569 0.67 0.992948
Target:  5'- cGGUAGAgcGACgcacgcUGAGCACG-UGCCa- -3'
miRNA:   3'- cCCGUCU--UUGa-----ACUUGUGCaACGGcg -5'
22957 5' -49.1 NC_005137.2 + 24387 0.67 0.992948
Target:  5'- uGGGUuu--GCUguUGGACGCGgcgucagGCCGCc -3'
miRNA:   3'- -CCCGucuuUGA--ACUUGUGCaa-----CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 63182 0.68 0.989293
Target:  5'- uGGaauaauaAGAAGCUUGccGACACGccggcGCCGCa -3'
miRNA:   3'- cCCg------UCUUUGAAC--UUGUGCaa---CGGCG- -5'
22957 5' -49.1 NC_005137.2 + 59759 0.68 0.987311
Target:  5'- aGGGCguagaaguguuuuuAGAGAUUUGcAACACGguggggUUGCgCGCg -3'
miRNA:   3'- -CCCG--------------UCUUUGAAC-UUGUGC------AACG-GCG- -5'
22957 5' -49.1 NC_005137.2 + 76535 0.68 0.986132
Target:  5'- cGGCAGuuuGACgcuaaUUGAGCAUuUUGCCGg -3'
miRNA:   3'- cCCGUCu--UUG-----AACUUGUGcAACGGCg -5'
22957 5' -49.1 NC_005137.2 + 52602 0.68 0.986132
Target:  5'- cGGCGGAGgcGCUUGAAacggaaGCGc-GCCGUu -3'
miRNA:   3'- cCCGUCUU--UGAACUUg-----UGCaaCGGCG- -5'
22957 5' -49.1 NC_005137.2 + 7315 0.68 0.985602
Target:  5'- cGGGCAGGAugcggucaaaguGCUggcgccccgccaguUGAGuCAUGUUGCUGg -3'
miRNA:   3'- -CCCGUCUU------------UGA--------------ACUU-GUGCAACGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.