miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22972 5' -52.2 NC_005137.2 + 126058 0.66 0.9767
Target:  5'- -uGGCUgGAGCugGCuGGCugGCUg-- -3'
miRNA:   3'- gcUCGAgUUUGugCG-CCGugUGAaca -5'
22972 5' -52.2 NC_005137.2 + 26802 0.66 0.9767
Target:  5'- uCGuGUUCGcGCuGCGaCGcGCACGCUUGUa -3'
miRNA:   3'- -GCuCGAGUuUG-UGC-GC-CGUGUGAACA- -5'
22972 5' -52.2 NC_005137.2 + 129526 0.66 0.9767
Target:  5'- aCGuGCUggCGAGCAuUGUGGCGCGCaUUGa -3'
miRNA:   3'- -GCuCGA--GUUUGU-GCGCCGUGUG-AACa -5'
22972 5' -52.2 NC_005137.2 + 100026 0.66 0.974058
Target:  5'- gGuGCgCAAGCACGCGGUccgACGCg--- -3'
miRNA:   3'- gCuCGaGUUUGUGCGCCG---UGUGaaca -5'
22972 5' -52.2 NC_005137.2 + 2591 0.66 0.974058
Target:  5'- uCGGGCgCGGGCACGuCGGC-CACcgcgUGa -3'
miRNA:   3'- -GCUCGaGUUUGUGC-GCCGuGUGa---ACa -5'
22972 5' -52.2 NC_005137.2 + 18644 0.66 0.974058
Target:  5'- uGGGCUUAAACuugACGuCGGCACAg---- -3'
miRNA:   3'- gCUCGAGUUUG---UGC-GCCGUGUgaaca -5'
22972 5' -52.2 NC_005137.2 + 39759 0.66 0.971206
Target:  5'- aCGAcGUccgUCAuauuccccGGCACGUGGCACACUg-- -3'
miRNA:   3'- -GCU-CG---AGU--------UUGUGCGCCGUGUGAaca -5'
22972 5' -52.2 NC_005137.2 + 96297 0.66 0.971206
Target:  5'- gCGuGCauUCGccGACACGcCGGCGCGCaagUGUg -3'
miRNA:   3'- -GCuCG--AGU--UUGUGC-GCCGUGUGa--ACA- -5'
22972 5' -52.2 NC_005137.2 + 63912 0.66 0.968134
Target:  5'- gCGAuGCUUGGcggacgguucGCACGCGGUGCGCgaaUGUc -3'
miRNA:   3'- -GCU-CGAGUU----------UGUGCGCCGUGUGa--ACA- -5'
22972 5' -52.2 NC_005137.2 + 88891 0.66 0.966184
Target:  5'- aCGAGCUgcgucccaucaacugCGAACugcCGCuGGCACACUUu- -3'
miRNA:   3'- -GCUCGA---------------GUUUGu--GCG-CCGUGUGAAca -5'
22972 5' -52.2 NC_005137.2 + 97479 0.67 0.960942
Target:  5'- uGAcGCUCGcGCAgGUGGCACguguaauACUUGg -3'
miRNA:   3'- gCU-CGAGUuUGUgCGCCGUG-------UGAACa -5'
22972 5' -52.2 NC_005137.2 + 6997 0.67 0.953531
Target:  5'- aCGAGCggucgcCGGGCacaACGUGGCGCACg--- -3'
miRNA:   3'- -GCUCGa-----GUUUG---UGCGCCGUGUGaaca -5'
22972 5' -52.2 NC_005137.2 + 130788 0.67 0.949272
Target:  5'- uGAGCUCGcuuuuGCugGCuuugucGGCGCGCgUGUc -3'
miRNA:   3'- gCUCGAGUu----UGugCG------CCGUGUGaACA- -5'
22972 5' -52.2 NC_005137.2 + 104163 0.67 0.949272
Target:  5'- aGAGCUCAuguacgagaacGACAUGCuGCGCAugaacCUUGa -3'
miRNA:   3'- gCUCGAGU-----------UUGUGCGcCGUGU-----GAACa -5'
22972 5' -52.2 NC_005137.2 + 68404 0.68 0.934976
Target:  5'- cCGAGCacaUCGAcuugUACGUGGCGCACggGUu -3'
miRNA:   3'- -GCUCG---AGUUu---GUGCGCCGUGUGaaCA- -5'
22972 5' -52.2 NC_005137.2 + 48703 0.68 0.924155
Target:  5'- aCGAGCUCGAguauAUugGCGGUAacaACUcGg -3'
miRNA:   3'- -GCUCGAGUU----UGugCGCCGUg--UGAaCa -5'
22972 5' -52.2 NC_005137.2 + 33147 0.68 0.918356
Target:  5'- -uGGUcugCAAACAUGUGcGCGCACUUGg -3'
miRNA:   3'- gcUCGa--GUUUGUGCGC-CGUGUGAACa -5'
22972 5' -52.2 NC_005137.2 + 33814 0.69 0.899413
Target:  5'- gGAGCUUAAugGCgGCGGCaacgACGCUa-- -3'
miRNA:   3'- gCUCGAGUUugUG-CGCCG----UGUGAaca -5'
22972 5' -52.2 NC_005137.2 + 123050 0.69 0.885522
Target:  5'- aCGGGCcgccggUCGAGguCGCGGCGCGCa--- -3'
miRNA:   3'- -GCUCG------AGUUUguGCGCCGUGUGaaca -5'
22972 5' -52.2 NC_005137.2 + 125277 0.7 0.854867
Target:  5'- aGAcGUUCGAGCgGCGCGGCccgcCGCUUGa -3'
miRNA:   3'- gCU-CGAGUUUG-UGCGCCGu---GUGAACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.