Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 15032 | 0.75 | 0.095774 |
Target: 5'- gCCUauCACUGCCuggugugGGGCGuUGAGGCGGUc -3' miRNA: 3'- gGGG--GUGACGG-------UCCGUuACUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 15092 | 0.73 | 0.127334 |
Target: 5'- gCCCCACa-CCAGGCAGUGAuaGGCccgcugcauGGCg -3' miRNA: 3'- gGGGGUGacGGUCCGUUACU--CCG---------CCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 15785 | 0.67 | 0.346005 |
Target: 5'- uUCUCUGCgGCCgAGGCGuUGcgcGGCGGCu -3' miRNA: 3'- -GGGGGUGaCGG-UCCGUuACu--CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 16653 | 0.8 | 0.036916 |
Target: 5'- aUCCCGCUGCCAGcCAAUggcGAGGCGGUc -3' miRNA: 3'- gGGGGUGACGGUCcGUUA---CUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 17147 | 0.67 | 0.321719 |
Target: 5'- aCCCCUugcGCU-CCAGGUAcucaauGGCGGCc -3' miRNA: 3'- -GGGGG---UGAcGGUCCGUuacu--CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 19894 | 0.66 | 0.389327 |
Target: 5'- gCCCUAUggaugUGCCGGGCu----GGCGGa -3' miRNA: 3'- gGGGGUG-----ACGGUCCGuuacuCCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 20539 | 0.73 | 0.123823 |
Target: 5'- aCCUUCA--GCUGGGCGGUGGcGGCGGCg -3' miRNA: 3'- -GGGGGUgaCGGUCCGUUACU-CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 20577 | 0.75 | 0.093352 |
Target: 5'- gCgCCCACUucGCCGGGuCGGgguuaccgGGGGCGGCg -3' miRNA: 3'- -GgGGGUGA--CGGUCC-GUUa-------CUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 20797 | 0.66 | 0.362912 |
Target: 5'- gCUCUGCUGUUGGGuCA---GGGCGGCg -3' miRNA: 3'- gGGGGUGACGGUCC-GUuacUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 20915 | 0.71 | 0.177204 |
Target: 5'- aCCCCGCU-CCAGGaCGccGAGGUcaucGGCg -3' miRNA: 3'- gGGGGUGAcGGUCC-GUuaCUCCG----CCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 21459 | 0.67 | 0.313912 |
Target: 5'- aCUUCCAuggcgaucuuCUGCCAGGUggUGGGGgccgccgcgaaGGCg -3' miRNA: 3'- -GGGGGU----------GACGGUCCGuuACUCCg----------CCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 21769 | 0.67 | 0.306249 |
Target: 5'- gCUCCGCUuuccaacgccaGCCAGGC-----GGCGGCg -3' miRNA: 3'- gGGGGUGA-----------CGGUCCGuuacuCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 22261 | 0.68 | 0.297244 |
Target: 5'- -gCCgACcGCCAGGCuggcccgccAGGCGGCg -3' miRNA: 3'- ggGGgUGaCGGUCCGuuac-----UCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 25495 | 0.76 | 0.080919 |
Target: 5'- uUCCCGCUGUU--GCAggGAGGCGGCg -3' miRNA: 3'- gGGGGUGACGGucCGUuaCUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 25979 | 0.67 | 0.32967 |
Target: 5'- aUCCCGCUgGCCAGGCuGGUGAccacGuCGGUg -3' miRNA: 3'- gGGGGUGA-CGGUCCG-UUACUc---C-GCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 26286 | 0.71 | 0.163308 |
Target: 5'- gCCggaaCCACcGCCGGGCAAcUGuccgccauGGCGGCg -3' miRNA: 3'- -GGg---GGUGaCGGUCCGUU-ACu-------CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 26628 | 0.71 | 0.171991 |
Target: 5'- aCgCCUAUaGCCAGGCAAUGgacgagcGGGCGaGCc -3' miRNA: 3'- -GgGGGUGaCGGUCCGUUAC-------UCCGC-CG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 27658 | 0.73 | 0.123823 |
Target: 5'- gCCgCCGCUGCCguGGGCAu--GGGCGcGCa -3' miRNA: 3'- -GGgGGUGACGG--UCCGUuacUCCGC-CG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 27935 | 0.69 | 0.250087 |
Target: 5'- -aCCCAgUUGCCcuGGGCGGccugGAGGuCGGCg -3' miRNA: 3'- ggGGGU-GACGG--UCCGUUa---CUCC-GCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 28086 | 0.66 | 0.364633 |
Target: 5'- aCCCgCCAgcuaggggcgucuCUGCUuuccggguuuggccuGGGCGGUGGcaccgauGGCGGCg -3' miRNA: 3'- -GGG-GGU-------------GACGG---------------UCCGUUACU-------CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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