Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 28328 | 0.75 | 0.088175 |
Target: 5'- aCCCCACUGacaCCAuuggcGGCGGccagcGAGGCGGCa -3' miRNA: 3'- gGGGGUGAC---GGU-----CCGUUa----CUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 28494 | 0.67 | 0.345175 |
Target: 5'- aCUCCGCUGCUgcuGGaCAucaaccaacgaggAUG-GGCGGCg -3' miRNA: 3'- gGGGGUGACGGu--CC-GU-------------UACuCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 28699 | 0.66 | 0.398408 |
Target: 5'- aCCCCgACcagauggcgGCCGacaugugggccGGCAA--GGGCGGCg -3' miRNA: 3'- -GGGGgUGa--------CGGU-----------CCGUUacUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 30846 | 0.68 | 0.270087 |
Target: 5'- gCCgcgaCCGCUGCCAGGCgGAUGuccuGGUucagcuccaaGGCg -3' miRNA: 3'- -GGg---GGUGACGGUCCG-UUACu---CCG----------CCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 33901 | 0.68 | 0.284123 |
Target: 5'- cCUgCCGC-GCCuggcGGCGAUGcucGGCGGCc -3' miRNA: 3'- -GGgGGUGaCGGu---CCGUUACu--CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 36388 | 0.69 | 0.22534 |
Target: 5'- uCgUCCGCUGUCGGGCAucagauUGAGaaaCGGCa -3' miRNA: 3'- -GgGGGUGACGGUCCGUu-----ACUCc--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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