Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 2717 | 0.66 | 0.389327 |
Target: 5'- gCCgCGCUGCUgaacgccgcccuGGGC---GAGGUGGCc -3' miRNA: 3'- gGGgGUGACGG------------UCCGuuaCUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 19894 | 0.66 | 0.389327 |
Target: 5'- gCCCUAUggaugUGCCGGGCu----GGCGGa -3' miRNA: 3'- gGGGGUG-----ACGGUCCGuuacuCCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 9495 | 0.66 | 0.389327 |
Target: 5'- gUCCCg--GCUAGGCc--GGGGCGGUu -3' miRNA: 3'- gGGGGugaCGGUCCGuuaCUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 10718 | 0.66 | 0.398408 |
Target: 5'- -aCUCACcGCCAGGau----GGCGGCa -3' miRNA: 3'- ggGGGUGaCGGUCCguuacuCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 28699 | 0.66 | 0.398408 |
Target: 5'- aCCCCgACcagauggcgGCCGacaugugggccGGCAA--GGGCGGCg -3' miRNA: 3'- -GGGGgUGa--------CGGU-----------CCGUUacUCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 8750 | 0.66 | 0.398408 |
Target: 5'- gCCCU--UGCCguGGGCGacuuggccagcGUGcGGGCGGCg -3' miRNA: 3'- gGGGGugACGG--UCCGU-----------UAC-UCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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