Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 3' | -59.6 | NC_005178.1 | + | 6829 | 0.75 | 0.090728 |
Target: 5'- gCCUCAUUGCCuGGCAGUGGGG-GuGCu -3' miRNA: 3'- gGGGGUGACGGuCCGUUACUCCgC-CG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 4543 | 0.66 | 0.380383 |
Target: 5'- --aCCACUGCCGGuaGCGcUG-GGCGGg -3' miRNA: 3'- gggGGUGACGGUC--CGUuACuCCGCCg -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 3986 | 0.68 | 0.267347 |
Target: 5'- cCCUCCGCUucgugcagcGcCCAGGCuucguugggggucAUGuGGCGGCg -3' miRNA: 3'- -GGGGGUGA---------C-GGUCCGu------------UACuCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 3752 | 0.68 | 0.284123 |
Target: 5'- gCgCCgAUguaGCCGGGCAGUuccuuGGCGGCg -3' miRNA: 3'- -GgGGgUGa--CGGUCCGUUAcu---CCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 3684 | 0.67 | 0.325677 |
Target: 5'- aCCCCCGCcugacuguuguagGgCAGGCuguucuucauaucGAUGcccAGGCGGCc -3' miRNA: 3'- -GGGGGUGa------------CgGUCCG-------------UUAC---UCCGCCG- -5' |
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23027 | 3' | -59.6 | NC_005178.1 | + | 2717 | 0.66 | 0.389327 |
Target: 5'- gCCgCGCUGCUgaacgccgcccuGGGC---GAGGUGGCc -3' miRNA: 3'- gGGgGUGACGG------------UCCGuuaCUCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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