miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23027 5' -55.7 NC_005178.1 + 96 0.71 0.300179
Target:  5'- -gAGGGCGUUuggaaaauAUCGAUCAGGAUUgAGCa -3'
miRNA:   3'- cgUCCCGUAG--------UGGCUGGUCCUAG-UCG- -5'
23027 5' -55.7 NC_005178.1 + 411 0.66 0.591669
Target:  5'- aGCAGaGGCuccauagaGUCACCG-CCAaugcGGAUC-GCu -3'
miRNA:   3'- -CGUC-CCG--------UAGUGGCuGGU----CCUAGuCG- -5'
23027 5' -55.7 NC_005178.1 + 1654 0.7 0.357508
Target:  5'- aGCucGGGCGggACuCGACCAGGcGUCgAGCa -3'
miRNA:   3'- -CGu-CCCGUagUG-GCUGGUCC-UAG-UCG- -5'
23027 5' -55.7 NC_005178.1 + 2555 0.71 0.323842
Target:  5'- uCAGGGCGUUACCGA--GGGcgagcgCAGCa -3'
miRNA:   3'- cGUCCCGUAGUGGCUggUCCua----GUCG- -5'
23027 5' -55.7 NC_005178.1 + 2864 0.68 0.431876
Target:  5'- gGC-GGGCAUCGgCGACCAGuugCuGGCg -3'
miRNA:   3'- -CGuCCCGUAGUgGCUGGUCcuaG-UCG- -5'
23027 5' -55.7 NC_005178.1 + 3528 0.77 0.132585
Target:  5'- cGUAGGGCAUCgACCaccACCAGGGccgacUCGGCc -3'
miRNA:   3'- -CGUCCCGUAG-UGGc--UGGUCCU-----AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 4887 0.72 0.263752
Target:  5'- --uGGGCAUCaaGCCGGCCGGGAcCAu- -3'
miRNA:   3'- cguCCCGUAG--UGGCUGGUCCUaGUcg -5'
23027 5' -55.7 NC_005178.1 + 5402 0.71 0.292594
Target:  5'- uCGGGGCcgCACCGGuguacagcuCCAGGuUCAGg -3'
miRNA:   3'- cGUCCCGuaGUGGCU---------GGUCCuAGUCg -5'
23027 5' -55.7 NC_005178.1 + 6818 0.7 0.3663
Target:  5'- -gAGGGCcaggaagauGCCGAUgGGGAUCAGUg -3'
miRNA:   3'- cgUCCCGuag------UGGCUGgUCCUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 6853 1.14 0.00022
Target:  5'- aGCAGGGCAUCACCGACCAGGAUCAGCa -3'
miRNA:   3'- -CGUCCCGUAGUGGCUGGUCCUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 7202 0.71 0.323842
Target:  5'- aGCAGcGCAUCG-CGACgGGGuuguUCAGCg -3'
miRNA:   3'- -CGUCcCGUAGUgGCUGgUCCu---AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 7468 0.8 0.071978
Target:  5'- cCAGGGCAUCACCcuGGCCuGGAgcgaaccgaUCAGCu -3'
miRNA:   3'- cGUCCCGUAGUGG--CUGGuCCU---------AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 8178 0.69 0.422091
Target:  5'- --cGGGCAccuggUCACCGAaCuGGAUCAGg -3'
miRNA:   3'- cguCCCGU-----AGUGGCUgGuCCUAGUCg -5'
23027 5' -55.7 NC_005178.1 + 8874 0.69 0.384325
Target:  5'- cGCcGGGCGacuuucUUGCCGACCuGGugcggcUCAGCg -3'
miRNA:   3'- -CGuCCCGU------AGUGGCUGGuCCu-----AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 9620 0.68 0.427946
Target:  5'- cGCAGGGCAUCGCgcucgcgcuucgcuCGuuggcguucccgcGCCAGG--CGGCg -3'
miRNA:   3'- -CGUCCCGUAGUG--------------GC-------------UGGUCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 9914 0.68 0.483738
Target:  5'- uUAGGGCcgCGCCagauuGACCAGGuacugguggaacucCAGCg -3'
miRNA:   3'- cGUCCCGuaGUGG-----CUGGUCCua------------GUCG- -5'
23027 5' -55.7 NC_005178.1 + 10109 0.75 0.161632
Target:  5'- -aGGGGCGaugggCGCUGGCCAGGAgcgCGGUg -3'
miRNA:   3'- cgUCCCGUa----GUGGCUGGUCCUa--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 10710 0.68 0.431876
Target:  5'- cGCGucGCAcUCACCG-CCAGGAUggCGGCa -3'
miRNA:   3'- -CGUccCGU-AGUGGCuGGUCCUA--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 10735 0.7 0.3663
Target:  5'- -aAGGGguUCAaCGGCugagaCAGGGUCGGCg -3'
miRNA:   3'- cgUCCCguAGUgGCUG-----GUCCUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 10850 0.68 0.462004
Target:  5'- gGCuGGGC----UCGGCCAGGAUggCGGCg -3'
miRNA:   3'- -CGuCCCGuaguGGCUGGUCCUA--GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.