miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23027 5' -55.7 NC_005178.1 + 34583 0.66 0.580473
Target:  5'- cCGGGGa---GCUGGCCGGGcgaGUCGGUg -3'
miRNA:   3'- cGUCCCguagUGGCUGGUCC---UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 23532 0.68 0.472291
Target:  5'- uCAGGGCGUCACUccgcuGGCCcgcagcccgcAGGcuucgccaGUCAGCu -3'
miRNA:   3'- cGUCCCGUAGUGG-----CUGG----------UCC--------UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 32526 0.68 0.472291
Target:  5'- -gGGcGGCAUCACCGACaacGGAauuaUCuGCu -3'
miRNA:   3'- cgUC-CCGUAGUGGCUGgu-CCU----AGuCG- -5'
23027 5' -55.7 NC_005178.1 + 23448 0.68 0.482692
Target:  5'- cCAGGGCGa---CGGCCAGGGcgccCGGCg -3'
miRNA:   3'- cGUCCCGUagugGCUGGUCCUa---GUCG- -5'
23027 5' -55.7 NC_005178.1 + 9914 0.68 0.483738
Target:  5'- uUAGGGCcgCGCCagauuGACCAGGuacugguggaacucCAGCg -3'
miRNA:   3'- cGUCCCGuaGUGG-----CUGGUCCua------------GUCG- -5'
23027 5' -55.7 NC_005178.1 + 25898 0.67 0.514529
Target:  5'- uGCcGGcGCAgaUCACCGACguGGucacCAGCc -3'
miRNA:   3'- -CGuCC-CGU--AGUGGCUGguCCua--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 26912 0.67 0.525333
Target:  5'- cGCGGGaaGCAauUCACCGAugcccuUCAGGAaaUCAGg -3'
miRNA:   3'- -CGUCC--CGU--AGUGGCU------GGUCCU--AGUCg -5'
23027 5' -55.7 NC_005178.1 + 15599 0.66 0.547187
Target:  5'- aGCAGGGg--CACCu-CCAGGcUCAGg -3'
miRNA:   3'- -CGUCCCguaGUGGcuGGUCCuAGUCg -5'
23027 5' -55.7 NC_005178.1 + 24427 0.66 0.558223
Target:  5'- -aAGGGCAUCAacCUGGCCgaAGG--CGGCg -3'
miRNA:   3'- cgUCCCGUAGU--GGCUGG--UCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 28122 0.68 0.462004
Target:  5'- gGCcuGGGCGguggCACCGAuggcggcgcCCAGGGgcugacggUCGGCg -3'
miRNA:   3'- -CGu-CCCGUa---GUGGCU---------GGUCCU--------AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 33892 0.68 0.431876
Target:  5'- cCAGGGCGUCcuGCCGcGCCuGG--CGGCg -3'
miRNA:   3'- cGUCCCGUAG--UGGC-UGGuCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 10710 0.68 0.431876
Target:  5'- cGCGucGCAcUCACCG-CCAGGAUggCGGCa -3'
miRNA:   3'- -CGUccCGU-AGUGGCuGGUCCUA--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 23360 0.75 0.157156
Target:  5'- cCGGGGCGUCGC--ACCAGGG-CGGCa -3'
miRNA:   3'- cGUCCCGUAGUGgcUGGUCCUaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 16606 0.73 0.237262
Target:  5'- aGCuGGGCGUCcagguGCCGGucaacuggguCCAGGAgCAGCu -3'
miRNA:   3'- -CGuCCCGUAG-----UGGCU----------GGUCCUaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 4887 0.72 0.263752
Target:  5'- --uGGGCAUCaaGCCGGCCGGGAcCAu- -3'
miRNA:   3'- cguCCCGUAG--UGGCUGGUCCUaGUcg -5'
23027 5' -55.7 NC_005178.1 + 28397 0.72 0.277875
Target:  5'- cCAGGGaccaggcaCACCGACCAGcGA-CAGCa -3'
miRNA:   3'- cGUCCCgua-----GUGGCUGGUC-CUaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 18198 0.71 0.284424
Target:  5'- cGCGGuGGCGUCuAUgGGCCGGGccaaauggagaacAUCAGCc -3'
miRNA:   3'- -CGUC-CCGUAG-UGgCUGGUCC-------------UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 96 0.71 0.300179
Target:  5'- -gAGGGCGUUuggaaaauAUCGAUCAGGAUUgAGCa -3'
miRNA:   3'- cgUCCCGUAG--------UGGCUGGUCCUAG-UCG- -5'
23027 5' -55.7 NC_005178.1 + 32888 0.7 0.348866
Target:  5'- cGCAGaGCAUCAgCGGCUGGGugaucucCAGCg -3'
miRNA:   3'- -CGUCcCGUAGUgGCUGGUCCua-----GUCG- -5'
23027 5' -55.7 NC_005178.1 + 26317 0.7 0.3663
Target:  5'- -uGGcGGCGUCACUcGCCAGGGcgaaCGGCa -3'
miRNA:   3'- cgUC-CCGUAGUGGcUGGUCCUa---GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.