Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23027 | 5' | -55.7 | NC_005178.1 | + | 32888 | 0.7 | 0.348866 |
Target: 5'- cGCAGaGCAUCAgCGGCUGGGugaucucCAGCg -3' miRNA: 3'- -CGUCcCGUAGUgGCUGGUCCua-----GUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 26317 | 0.7 | 0.3663 |
Target: 5'- -uGGcGGCGUCACUcGCCAGGGcgaaCGGCa -3' miRNA: 3'- cgUC-CCGUAGUGGcUGGUCCUa---GUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 10710 | 0.68 | 0.431876 |
Target: 5'- cGCGucGCAcUCACCG-CCAGGAUggCGGCa -3' miRNA: 3'- -CGUccCGU-AGUGGCuGGUCCUA--GUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 33892 | 0.68 | 0.431876 |
Target: 5'- cCAGGGCGUCcuGCCGcGCCuGG--CGGCg -3' miRNA: 3'- cGUCCCGUAG--UGGC-UGGuCCuaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 28122 | 0.68 | 0.462004 |
Target: 5'- gGCcuGGGCGguggCACCGAuggcggcgcCCAGGGgcugacggUCGGCg -3' miRNA: 3'- -CGu-CCCGUa---GUGGCU---------GGUCCU--------AGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 13311 | 0.69 | 0.393555 |
Target: 5'- aCAGGGCGccgCAUCGAUUGGGAU-GGCu -3' miRNA: 3'- cGUCCCGUa--GUGGCUGGUCCUAgUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 18594 | 0.69 | 0.412441 |
Target: 5'- cCAGGGCGUUGgUGACCuGGAgaaUCGGg -3' miRNA: 3'- cGUCCCGUAGUgGCUGGuCCU---AGUCg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 12811 | 0.69 | 0.415321 |
Target: 5'- cGCAGGGCGUCGCgGguuuccuucgggugcGCCAuGGAcuaccccUCAGa -3' miRNA: 3'- -CGUCCCGUAGUGgC---------------UGGU-CCU-------AGUCg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 8178 | 0.69 | 0.422091 |
Target: 5'- --cGGGCAccuggUCACCGAaCuGGAUCAGg -3' miRNA: 3'- cguCCCGU-----AGUGGCUgGuCCUAGUCg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 9620 | 0.68 | 0.427946 |
Target: 5'- cGCAGGGCAUCGCgcucgcgcuucgcuCGuuggcguucccgcGCCAGG--CGGCg -3' miRNA: 3'- -CGUCCCGUAGUG--------------GC-------------UGGUCCuaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 2864 | 0.68 | 0.431876 |
Target: 5'- gGC-GGGCAUCGgCGACCAGuugCuGGCg -3' miRNA: 3'- -CGuCCCGUAGUgGCUGGUCcuaG-UCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 16204 | 0.68 | 0.451837 |
Target: 5'- uGCcGGGCGgguacuUC-CCGAgCcGGAUCGGCa -3' miRNA: 3'- -CGuCCCGU------AGuGGCUgGuCCUAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 10850 | 0.68 | 0.462004 |
Target: 5'- gGCuGGGC----UCGGCCAGGAUggCGGCg -3' miRNA: 3'- -CGuCCCGuaguGGCUGGUCCUA--GUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 20580 | 0.68 | 0.462004 |
Target: 5'- --cGGGCGcccacuUCGCCGggucgggguuACCGGGggCGGCg -3' miRNA: 3'- cguCCCGU------AGUGGC----------UGGUCCuaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 16902 | 0.68 | 0.472291 |
Target: 5'- cCAGGaGCggCG-CGACCAGGcuAUCGGCc -3' miRNA: 3'- cGUCC-CGuaGUgGCUGGUCC--UAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 31113 | 0.68 | 0.482692 |
Target: 5'- aGCGGcGGCGaCGCCuGGCCAGa--CAGCg -3' miRNA: 3'- -CGUC-CCGUaGUGG-CUGGUCcuaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 27702 | 0.67 | 0.503817 |
Target: 5'- aGCGGcGGCA-CGuuGACCcuggAGGGcCAGCg -3' miRNA: 3'- -CGUC-CCGUaGUggCUGG----UCCUaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 20184 | 0.67 | 0.514529 |
Target: 5'- aGUAGaGGUAcUCGCCGuCUucGAUCAGCu -3' miRNA: 3'- -CGUC-CCGU-AGUGGCuGGucCUAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 24318 | 0.67 | 0.524248 |
Target: 5'- cGCAGGGCGUaaUACUGcgggucgaggggcGCCGGGcugcucgcgcuGUCGGUg -3' miRNA: 3'- -CGUCCCGUA--GUGGC-------------UGGUCC-----------UAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 17258 | 0.67 | 0.525333 |
Target: 5'- cCAGGGCGUCGCgGAuguCCuGGAgcacauccaGGCg -3' miRNA: 3'- cGUCCCGUAGUGgCU---GGuCCUag-------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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