miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23027 5' -55.7 NC_005178.1 + 25898 0.67 0.514529
Target:  5'- uGCcGGcGCAgaUCACCGACguGGucacCAGCc -3'
miRNA:   3'- -CGuCC-CGU--AGUGGCUGguCCua--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 23448 0.68 0.482692
Target:  5'- cCAGGGCGa---CGGCCAGGGcgccCGGCg -3'
miRNA:   3'- cGUCCCGUagugGCUGGUCCUa---GUCG- -5'
23027 5' -55.7 NC_005178.1 + 10850 0.68 0.462004
Target:  5'- gGCuGGGC----UCGGCCAGGAUggCGGCg -3'
miRNA:   3'- -CGuCCCGuaguGGCUGGUCCUA--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 16204 0.68 0.451837
Target:  5'- uGCcGGGCGgguacuUC-CCGAgCcGGAUCGGCa -3'
miRNA:   3'- -CGuCCCGU------AGuGGCUgGuCCUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 2864 0.68 0.431876
Target:  5'- gGC-GGGCAUCGgCGACCAGuugCuGGCg -3'
miRNA:   3'- -CGuCCCGUAGUgGCUGGUCcuaG-UCG- -5'
23027 5' -55.7 NC_005178.1 + 31113 0.68 0.482692
Target:  5'- aGCGGcGGCGaCGCCuGGCCAGa--CAGCg -3'
miRNA:   3'- -CGUC-CCGUaGUGG-CUGGUCcuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 9620 0.68 0.427946
Target:  5'- cGCAGGGCAUCGCgcucgcgcuucgcuCGuuggcguucccgcGCCAGG--CGGCg -3'
miRNA:   3'- -CGUCCCGUAGUG--------------GC-------------UGGUCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 16902 0.68 0.472291
Target:  5'- cCAGGaGCggCG-CGACCAGGcuAUCGGCc -3'
miRNA:   3'- cGUCC-CGuaGUgGCUGGUCC--UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 10710 0.68 0.431876
Target:  5'- cGCGucGCAcUCACCG-CCAGGAUggCGGCa -3'
miRNA:   3'- -CGUccCGU-AGUGGCuGGUCCUA--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 9914 0.68 0.483738
Target:  5'- uUAGGGCcgCGCCagauuGACCAGGuacugguggaacucCAGCg -3'
miRNA:   3'- cGUCCCGuaGUGG-----CUGGUCCua------------GUCG- -5'
23027 5' -55.7 NC_005178.1 + 33892 0.68 0.431876
Target:  5'- cCAGGGCGUCcuGCCGcGCCuGG--CGGCg -3'
miRNA:   3'- cGUCCCGUAG--UGGC-UGGuCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 28122 0.68 0.462004
Target:  5'- gGCcuGGGCGguggCACCGAuggcggcgcCCAGGGgcugacggUCGGCg -3'
miRNA:   3'- -CGu-CCCGUa---GUGGCU---------GGUCCU--------AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 23532 0.68 0.472291
Target:  5'- uCAGGGCGUCACUccgcuGGCCcgcagcccgcAGGcuucgccaGUCAGCu -3'
miRNA:   3'- cGUCCCGUAGUGG-----CUGG----------UCC--------UAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 32526 0.68 0.472291
Target:  5'- -gGGcGGCAUCACCGACaacGGAauuaUCuGCu -3'
miRNA:   3'- cgUC-CCGUAGUGGCUGgu-CCU----AGuCG- -5'
23027 5' -55.7 NC_005178.1 + 20580 0.68 0.462004
Target:  5'- --cGGGCGcccacuUCGCCGggucgggguuACCGGGggCGGCg -3'
miRNA:   3'- cguCCCGU------AGUGGC----------UGGUCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 8874 0.69 0.384325
Target:  5'- cGCcGGGCGacuuucUUGCCGACCuGGugcggcUCAGCg -3'
miRNA:   3'- -CGuCCCGU------AGUGGCUGGuCCu-----AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 8178 0.69 0.422091
Target:  5'- --cGGGCAccuggUCACCGAaCuGGAUCAGg -3'
miRNA:   3'- cguCCCGU-----AGUGGCUgGuCCUAGUCg -5'
23027 5' -55.7 NC_005178.1 + 12811 0.69 0.415321
Target:  5'- cGCAGGGCGUCGCgGguuuccuucgggugcGCCAuGGAcuaccccUCAGa -3'
miRNA:   3'- -CGUCCCGUAGUGgC---------------UGGU-CCU-------AGUCg -5'
23027 5' -55.7 NC_005178.1 + 28240 0.69 0.393555
Target:  5'- cCAGGGC---GCCGGCCGaggcGGAUaCAGCc -3'
miRNA:   3'- cGUCCCGuagUGGCUGGU----CCUA-GUCG- -5'
23027 5' -55.7 NC_005178.1 + 13311 0.69 0.393555
Target:  5'- aCAGGGCGccgCAUCGAUUGGGAU-GGCu -3'
miRNA:   3'- cGUCCCGUa--GUGGCUGGUCCUAgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.