miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23027 5' -55.7 NC_005178.1 + 11196 0.71 0.315803
Target:  5'- cCAGGGCGcccgCGCUGAUguGGAugccaaacauuuUCAGCa -3'
miRNA:   3'- cGUCCCGUa---GUGGCUGguCCU------------AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 12029 0.71 0.323031
Target:  5'- cCAGGGCuaggccgGUC-UCGAUCAGGAUCAcGCc -3'
miRNA:   3'- cGUCCCG-------UAGuGGCUGGUCCUAGU-CG- -5'
23027 5' -55.7 NC_005178.1 + 2555 0.71 0.323842
Target:  5'- uCAGGGCGUUACCGA--GGGcgagcgCAGCa -3'
miRNA:   3'- cGUCCCGUAGUGGCUggUCCua----GUCG- -5'
23027 5' -55.7 NC_005178.1 + 7202 0.71 0.323842
Target:  5'- aGCAGcGCAUCG-CGACgGGGuuguUCAGCg -3'
miRNA:   3'- -CGUCcCGUAGUgGCUGgUCCu---AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 32888 0.7 0.348866
Target:  5'- cGCAGaGCAUCAgCGGCUGGGugaucucCAGCg -3'
miRNA:   3'- -CGUCcCGUAGUgGCUGGUCCua-----GUCG- -5'
23027 5' -55.7 NC_005178.1 + 1654 0.7 0.357508
Target:  5'- aGCucGGGCGggACuCGACCAGGcGUCgAGCa -3'
miRNA:   3'- -CGu-CCCGUagUG-GCUGGUCC-UAG-UCG- -5'
23027 5' -55.7 NC_005178.1 + 10735 0.7 0.3663
Target:  5'- -aAGGGguUCAaCGGCugagaCAGGGUCGGCg -3'
miRNA:   3'- cgUCCCguAGUgGCUG-----GUCCUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 6818 0.7 0.3663
Target:  5'- -gAGGGCcaggaagauGCCGAUgGGGAUCAGUg -3'
miRNA:   3'- cgUCCCGuag------UGGCUGgUCCUAGUCG- -5'
23027 5' -55.7 NC_005178.1 + 26317 0.7 0.3663
Target:  5'- -uGGcGGCGUCACUcGCCAGGGcgaaCGGCa -3'
miRNA:   3'- cgUC-CCGUAGUGGcUGGUCCUa---GUCG- -5'
23027 5' -55.7 NC_005178.1 + 23072 0.7 0.375239
Target:  5'- cGCGGGGUggucGUCcUUGACCuGGGUguGCa -3'
miRNA:   3'- -CGUCCCG----UAGuGGCUGGuCCUAguCG- -5'
23027 5' -55.7 NC_005178.1 + 8874 0.69 0.384325
Target:  5'- cGCcGGGCGacuuucUUGCCGACCuGGugcggcUCAGCg -3'
miRNA:   3'- -CGuCCCGU------AGUGGCUGGuCCu-----AGUCG- -5'
23027 5' -55.7 NC_005178.1 + 28240 0.69 0.393555
Target:  5'- cCAGGGC---GCCGGCCGaggcGGAUaCAGCc -3'
miRNA:   3'- cGUCCCGuagUGGCUGGU----CCUA-GUCG- -5'
23027 5' -55.7 NC_005178.1 + 13311 0.69 0.393555
Target:  5'- aCAGGGCGccgCAUCGAUUGGGAU-GGCu -3'
miRNA:   3'- cGUCCCGUa--GUGGCUGGUCCUAgUCG- -5'
23027 5' -55.7 NC_005178.1 + 18594 0.69 0.412441
Target:  5'- cCAGGGCGUUGgUGACCuGGAgaaUCGGg -3'
miRNA:   3'- cGUCCCGUAGUgGCUGGuCCU---AGUCg -5'
23027 5' -55.7 NC_005178.1 + 12811 0.69 0.415321
Target:  5'- cGCAGGGCGUCGCgGguuuccuucgggugcGCCAuGGAcuaccccUCAGa -3'
miRNA:   3'- -CGUCCCGUAGUGgC---------------UGGU-CCU-------AGUCg -5'
23027 5' -55.7 NC_005178.1 + 8178 0.69 0.422091
Target:  5'- --cGGGCAccuggUCACCGAaCuGGAUCAGg -3'
miRNA:   3'- cguCCCGU-----AGUGGCUgGuCCUAGUCg -5'
23027 5' -55.7 NC_005178.1 + 9620 0.68 0.427946
Target:  5'- cGCAGGGCAUCGCgcucgcgcuucgcuCGuuggcguucccgcGCCAGG--CGGCg -3'
miRNA:   3'- -CGUCCCGUAGUG--------------GC-------------UGGUCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 10710 0.68 0.431876
Target:  5'- cGCGucGCAcUCACCG-CCAGGAUggCGGCa -3'
miRNA:   3'- -CGUccCGU-AGUGGCuGGUCCUA--GUCG- -5'
23027 5' -55.7 NC_005178.1 + 33892 0.68 0.431876
Target:  5'- cCAGGGCGUCcuGCCGcGCCuGG--CGGCg -3'
miRNA:   3'- cGUCCCGUAG--UGGC-UGGuCCuaGUCG- -5'
23027 5' -55.7 NC_005178.1 + 2864 0.68 0.431876
Target:  5'- gGC-GGGCAUCGgCGACCAGuugCuGGCg -3'
miRNA:   3'- -CGuCCCGUAGUgGCUGGUCcuaG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.