Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23027 | 5' | -55.7 | NC_005178.1 | + | 6853 | 1.14 | 0.00022 |
Target: 5'- aGCAGGGCAUCACCGACCAGGAUCAGCa -3' miRNA: 3'- -CGUCCCGUAGUGGCUGGUCCUAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 7468 | 0.8 | 0.071978 |
Target: 5'- cCAGGGCAUCACCcuGGCCuGGAgcgaaccgaUCAGCu -3' miRNA: 3'- cGUCCCGUAGUGG--CUGGuCCU---------AGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 11461 | 0.78 | 0.110636 |
Target: 5'- cGCAGGGCcgCACCGAUCAGccaccaggcgggcaGAcCGGCa -3' miRNA: 3'- -CGUCCCGuaGUGGCUGGUC--------------CUaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 3528 | 0.77 | 0.132585 |
Target: 5'- cGUAGGGCAUCgACCaccACCAGGGccgacUCGGCc -3' miRNA: 3'- -CGUCCCGUAG-UGGc--UGGUCCU-----AGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 33971 | 0.76 | 0.136031 |
Target: 5'- cCAGGccgccgaGCAUCGCCG-CCAGGcgCGGCa -3' miRNA: 3'- cGUCC-------CGUAGUGGCuGGUCCuaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 23360 | 0.75 | 0.157156 |
Target: 5'- cCGGGGCGUCGC--ACCAGGG-CGGCa -3' miRNA: 3'- cGUCCCGUAGUGgcUGGUCCUaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 32083 | 0.75 | 0.161632 |
Target: 5'- cCAGGGUcagGUCGUCGGCguGGGUCGGCa -3' miRNA: 3'- cGUCCCG---UAGUGGCUGguCCUAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 10109 | 0.75 | 0.161632 |
Target: 5'- -aGGGGCGaugggCGCUGGCCAGGAgcgCGGUg -3' miRNA: 3'- cgUCCCGUa----GUGGCUGGUCCUa--GUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 12480 | 0.75 | 0.17093 |
Target: 5'- uCGGGGUugucaucaGUCACCGccACCGGGGUCGGg -3' miRNA: 3'- cGUCCCG--------UAGUGGC--UGGUCCUAGUCg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 15334 | 0.74 | 0.187835 |
Target: 5'- uGCAGGGCGUCgggGCCaucgucguggucugcGGCCGGGAaguggcgCAGCu -3' miRNA: 3'- -CGUCCCGUAG---UGG---------------CUGGUCCUa------GUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 16606 | 0.73 | 0.237262 |
Target: 5'- aGCuGGGCGUCcagguGCCGGucaacuggguCCAGGAgCAGCu -3' miRNA: 3'- -CGuCCCGUAG-----UGGCU----------GGUCCUaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 13934 | 0.72 | 0.256912 |
Target: 5'- cGCcGGGCggCGCUGGCCuucGGGUCGGg -3' miRNA: 3'- -CGuCCCGuaGUGGCUGGu--CCUAGUCg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 14410 | 0.72 | 0.256912 |
Target: 5'- cCAGGuCGUCGCCGACCAccaGGUCAGg -3' miRNA: 3'- cGUCCcGUAGUGGCUGGUc--CUAGUCg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 25987 | 0.72 | 0.263752 |
Target: 5'- aCAGuGGCAUCccGCUGGCCAGGcuggugaccacGUCGGUg -3' miRNA: 3'- cGUC-CCGUAG--UGGCUGGUCC-----------UAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 37146 | 0.72 | 0.263752 |
Target: 5'- cCAGG---UCGCCGACCGGGAcgcCAGCg -3' miRNA: 3'- cGUCCcguAGUGGCUGGUCCUa--GUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 4887 | 0.72 | 0.263752 |
Target: 5'- --uGGGCAUCaaGCCGGCCGGGAcCAu- -3' miRNA: 3'- cguCCCGUAG--UGGCUGGUCCUaGUcg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 28397 | 0.72 | 0.277875 |
Target: 5'- cCAGGGaccaggcaCACCGACCAGcGA-CAGCa -3' miRNA: 3'- cGUCCCgua-----GUGGCUGGUC-CUaGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 18198 | 0.71 | 0.284424 |
Target: 5'- cGCGGuGGCGUCuAUgGGCCGGGccaaauggagaacAUCAGCc -3' miRNA: 3'- -CGUC-CCGUAG-UGgCUGGUCC-------------UAGUCG- -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 5402 | 0.71 | 0.292594 |
Target: 5'- uCGGGGCcgCACCGGuguacagcuCCAGGuUCAGg -3' miRNA: 3'- cGUCCCGuaGUGGCU---------GGUCCuAGUCg -5' |
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23027 | 5' | -55.7 | NC_005178.1 | + | 96 | 0.71 | 0.300179 |
Target: 5'- -gAGGGCGUUuggaaaauAUCGAUCAGGAUUgAGCa -3' miRNA: 3'- cgUCCCGUAG--------UGGCUGGUCCUAG-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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