Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23030 | 5' | -56.5 | NC_005178.1 | + | 32682 | 0.67 | 0.460145 |
Target: 5'- aCCGCuCGgcgACCGG-GUCUUGUacaGCAGCg -3' miRNA: 3'- -GGUG-GCa--UGGUCgCGGAACAc--CGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 25493 | 0.67 | 0.484798 |
Target: 5'- cCCGCUGUugCAGggaggcggcgaccauCGCCUUGauccgGGCcGCc -3' miRNA: 3'- -GGUGGCAugGUC---------------GCGGAACa----CCGuCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 3218 | 0.67 | 0.490013 |
Target: 5'- gCC-CC-UGCCAGUGCUUcuccagcagugcaUG-GGCAGCg -3' miRNA: 3'- -GGuGGcAUGGUCGCGGA-------------ACaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 9402 | 0.67 | 0.501578 |
Target: 5'- gCGCCGUGCCAG-GCaCUcGUcGCAGg -3' miRNA: 3'- gGUGGCAUGGUCgCG-GAaCAcCGUCg -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 34647 | 0.67 | 0.49106 |
Target: 5'- cUCACCGacucgcccgGCCAGCuCCccgGUGGCAcGCc -3' miRNA: 3'- -GGUGGCa--------UGGUCGcGGaa-CACCGU-CG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 3983 | 0.67 | 0.490013 |
Target: 5'- uCCGCuuCGUG-CAGCGCCcaggcUucguugggggucaUGUGGCGGCg -3' miRNA: 3'- -GGUG--GCAUgGUCGCGG-----A-------------ACACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 13870 | 0.67 | 0.470338 |
Target: 5'- cCCGacCCGaagGCCAGCGCCgcccggcgUGaacgGGcCAGCg -3' miRNA: 3'- -GGU--GGCa--UGGUCGCGGa-------ACa---CC-GUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 26260 | 0.68 | 0.411036 |
Target: 5'- aCGCCaGaGCCAGCGCCacgcccGCAGCg -3' miRNA: 3'- gGUGG-CaUGGUCGCGGaacac-CGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 21279 | 0.68 | 0.40914 |
Target: 5'- cCgGCCGgggagcggguuUCGGUGCCguccGUGGCGGCg -3' miRNA: 3'- -GgUGGCau---------GGUCGCGGaa--CACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 27664 | 0.68 | 0.399741 |
Target: 5'- gCUGCCGUGggcaugggcgcgcaaCAGCGCCgcuuguucgaucagcGUGGCAGCc -3' miRNA: 3'- -GGUGGCAUg--------------GUCGCGGaa-------------CACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 13115 | 0.68 | 0.40161 |
Target: 5'- gCCACCGcUAuggaggugcuCCAGCGCCU---GGcCAGCu -3' miRNA: 3'- -GGUGGC-AU----------GGUCGCGGAacaCC-GUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 20980 | 0.68 | 0.429318 |
Target: 5'- gCCAUCGUcguggcgaacgcuACCGGguuCGCCgUGggcGGCAGCa -3' miRNA: 3'- -GGUGGCA-------------UGGUC---GCGGaACa--CCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 12962 | 0.68 | 0.444085 |
Target: 5'- aCCACCG-GCCAgcaacugcgccgauuGCGCCUUGUccCAGUc -3' miRNA: 3'- -GGUGGCaUGGU---------------CGCGGAACAccGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 17146 | 0.69 | 0.356599 |
Target: 5'- gCCACCcaUGCCcgAGCGCUgacgGUGGCcaaGGCg -3' miRNA: 3'- -GGUGGc-AUGG--UCGCGGaa--CACCG---UCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 29476 | 0.69 | 0.365312 |
Target: 5'- -aACCGaGCCAGCGCCc---GGCGGg -3' miRNA: 3'- ggUGGCaUGGUCGCGGaacaCCGUCg -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 21677 | 0.69 | 0.382269 |
Target: 5'- gCCGCCGaguaACCGGCcaucuucGCCUgg-GGCGGUa -3' miRNA: 3'- -GGUGGCa---UGGUCG-------CGGAacaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 17559 | 0.69 | 0.374172 |
Target: 5'- gCCGCCGaauggcuacaacUGCCGGUGCCgaaucguuccgUUGacGGCGGCc -3' miRNA: 3'- -GGUGGC------------AUGGUCGCGG-----------AACa-CCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 19741 | 0.69 | 0.374172 |
Target: 5'- aCCGCCGcgcucgACCGuCGCCaccaUGGCGGCa -3' miRNA: 3'- -GGUGGCa-----UGGUcGCGGaac-ACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 28958 | 0.7 | 0.299757 |
Target: 5'- aUCGCCGUgcGCCAggugacccugcGCGCCccUGgccugGGCGGCa -3' miRNA: 3'- -GGUGGCA--UGGU-----------CGCGGa-ACa----CCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 30633 | 0.7 | 0.339614 |
Target: 5'- gCCACCGauuucggcagcACCAGCGCCUg--GGuCGGUu -3' miRNA: 3'- -GGUGGCa----------UGGUCGCGGAacaCC-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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