Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23030 | 5' | -56.5 | NC_005178.1 | + | 3759 | 0.71 | 0.292233 |
Target: 5'- gCGCCGgGCCAuCGCCaaG-GGCGGCa -3' miRNA: 3'- gGUGGCaUGGUcGCGGaaCaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 28958 | 0.7 | 0.299757 |
Target: 5'- aUCGCCGUgcGCCAggugacccugcGCGCCccUGgccugGGCGGCa -3' miRNA: 3'- -GGUGGCA--UGGU-----------CGCGGa-ACa----CCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 31296 | 0.7 | 0.30743 |
Target: 5'- -aGCCGUGacCCAGCGCCg---GGCuauGCg -3' miRNA: 3'- ggUGGCAU--GGUCGCGGaacaCCGu--CG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 6565 | 0.7 | 0.331344 |
Target: 5'- gCCuCCGUGCgCAGCGauCCUUGUGGaAGg -3' miRNA: 3'- -GGuGGCAUG-GUCGC--GGAACACCgUCg -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 30633 | 0.7 | 0.339614 |
Target: 5'- gCCACCGauuucggcagcACCAGCGCCUg--GGuCGGUu -3' miRNA: 3'- -GGUGGCa----------UGGUCGCGGAacaCC-GUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 17146 | 0.69 | 0.356599 |
Target: 5'- gCCACCcaUGCCcgAGCGCUgacgGUGGCcaaGGCg -3' miRNA: 3'- -GGUGGc-AUGG--UCGCGGaa--CACCG---UCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 17559 | 0.69 | 0.374172 |
Target: 5'- gCCGCCGaauggcuacaacUGCCGGUGCCgaaucguuccgUUGacGGCGGCc -3' miRNA: 3'- -GGUGGC------------AUGGUCGCGG-----------AACa-CCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 19741 | 0.69 | 0.374172 |
Target: 5'- aCCGCCGcgcucgACCGuCGCCaccaUGGCGGCa -3' miRNA: 3'- -GGUGGCa-----UGGUcGCGGaac-ACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 21279 | 0.68 | 0.40914 |
Target: 5'- cCgGCCGgggagcggguuUCGGUGCCguccGUGGCGGCg -3' miRNA: 3'- -GgUGGCau---------GGUCGCGGaa--CACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 26260 | 0.68 | 0.411036 |
Target: 5'- aCGCCaGaGCCAGCGCCacgcccGCAGCg -3' miRNA: 3'- gGUGG-CaUGGUCGCGGaacac-CGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 12962 | 0.68 | 0.444085 |
Target: 5'- aCCACCG-GCCAgcaacugcgccgauuGCGCCUUGUccCAGUc -3' miRNA: 3'- -GGUGGCaUGGU---------------CGCGGAACAccGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 22995 | 0.67 | 0.460145 |
Target: 5'- gCACCuggGCCAGCGgCagcUGGUAGCg -3' miRNA: 3'- gGUGGca-UGGUCGCgGaacACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 23561 | 0.67 | 0.460145 |
Target: 5'- cCCAgCCGgu-CAGUGCCUUGa-GCAGCc -3' miRNA: 3'- -GGU-GGCaugGUCGCGGAACacCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 21677 | 0.69 | 0.382269 |
Target: 5'- gCCGCCGaguaACCGGCcaucuucGCCUgg-GGCGGUa -3' miRNA: 3'- -GGUGGCa---UGGUCG-------CGGAacaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 29476 | 0.69 | 0.365312 |
Target: 5'- -aACCGaGCCAGCGCCc---GGCGGg -3' miRNA: 3'- ggUGGCaUGGUCGCGGaacaCCGUCg -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 20554 | 0.7 | 0.339614 |
Target: 5'- uUACCGggGgCGGCGaCCUUcagcugggcgGUGGCGGCg -3' miRNA: 3'- gGUGGCa-UgGUCGC-GGAA----------CACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 17211 | 0.7 | 0.331344 |
Target: 5'- gCCACCGU--CAGCGCUcgggcauggGUGGCcGCg -3' miRNA: 3'- -GGUGGCAugGUCGCGGaa-------CACCGuCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 5349 | 0.7 | 0.299757 |
Target: 5'- uCCAgcUCGcGCCGGC-CCUgaacgGUGGCGGCc -3' miRNA: 3'- -GGU--GGCaUGGUCGcGGAa----CACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 24073 | 0.73 | 0.202019 |
Target: 5'- gCugCGUACCAGgGCUUUcUGGCcGCu -3' miRNA: 3'- gGugGCAUGGUCgCGGAAcACCGuCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 19749 | 0.66 | 0.566514 |
Target: 5'- -aACCGU-CCGGCGCCaucUUcUGGCcaAGCc -3' miRNA: 3'- ggUGGCAuGGUCGCGG---AAcACCG--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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