Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23030 | 5' | -56.5 | NC_005178.1 | + | 34647 | 0.67 | 0.49106 |
Target: 5'- cUCACCGacucgcccgGCCAGCuCCccgGUGGCAcGCc -3' miRNA: 3'- -GGUGGCa--------UGGUCGcGGaa-CACCGU-CG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 12429 | 0.66 | 0.522903 |
Target: 5'- gCCGCCGg--UAGUgGCCUg--GGCGGCa -3' miRNA: 3'- -GGUGGCaugGUCG-CGGAacaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 27944 | 0.66 | 0.555509 |
Target: 5'- gCC-CCGUugacCCAGuUGCCcUG-GGCGGCc -3' miRNA: 3'- -GGuGGCAu---GGUC-GCGGaACaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 22995 | 0.67 | 0.460145 |
Target: 5'- gCACCuggGCCAGCGgCagcUGGUAGCg -3' miRNA: 3'- gGUGGca-UGGUCGCgGaacACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 24073 | 0.73 | 0.202019 |
Target: 5'- gCugCGUACCAGgGCUUUcUGGCcGCu -3' miRNA: 3'- gGugGCAUGGUCgCGGAAcACCGuCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 3759 | 0.71 | 0.292233 |
Target: 5'- gCGCCGgGCCAuCGCCaaG-GGCGGCa -3' miRNA: 3'- gGUGGCaUGGUcGCGGaaCaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 35726 | 0.66 | 0.544567 |
Target: 5'- uCCGCUccaggACguGCGCCUUGUccuGcGCAGUg -3' miRNA: 3'- -GGUGGca---UGguCGCGGAACA---C-CGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 24578 | 0.66 | 0.544567 |
Target: 5'- -aGCCGgaUACCGGCGaCCUg--GGCcGCu -3' miRNA: 3'- ggUGGC--AUGGUCGC-GGAacaCCGuCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 28958 | 0.7 | 0.299757 |
Target: 5'- aUCGCCGUgcGCCAggugacccugcGCGCCccUGgccugGGCGGCa -3' miRNA: 3'- -GGUGGCA--UGGU-----------CGCGGa-ACa----CCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 17146 | 0.69 | 0.356599 |
Target: 5'- gCCACCcaUGCCcgAGCGCUgacgGUGGCcaaGGCg -3' miRNA: 3'- -GGUGGc-AUGG--UCGCGGaa--CACCG---UCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 17559 | 0.69 | 0.374172 |
Target: 5'- gCCGCCGaauggcuacaacUGCCGGUGCCgaaucguuccgUUGacGGCGGCc -3' miRNA: 3'- -GGUGGC------------AUGGUCGCGG-----------AACa-CCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 19741 | 0.69 | 0.374172 |
Target: 5'- aCCGCCGcgcucgACCGuCGCCaccaUGGCGGCa -3' miRNA: 3'- -GGUGGCa-----UGGUcGCGGaac-ACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 27664 | 0.68 | 0.399741 |
Target: 5'- gCUGCCGUGggcaugggcgcgcaaCAGCGCCgcuuguucgaucagcGUGGCAGCc -3' miRNA: 3'- -GGUGGCAUg--------------GUCGCGGaa-------------CACCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 13115 | 0.68 | 0.40161 |
Target: 5'- gCCACCGcUAuggaggugcuCCAGCGCCU---GGcCAGCu -3' miRNA: 3'- -GGUGGC-AU----------GGUCGCGGAacaCC-GUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 6050 | 0.66 | 0.522903 |
Target: 5'- -aGCCGUGaugaagaCGGUGCCgagggGUGGCcGCc -3' miRNA: 3'- ggUGGCAUg------GUCGCGGaa---CACCGuCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 9325 | 0.66 | 0.533696 |
Target: 5'- aCGCCGUuuCCuGCGCCUgcgacgagUGccUGGCAcgGCg -3' miRNA: 3'- gGUGGCAu-GGuCGCGGA--------AC--ACCGU--CG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 11228 | 0.66 | 0.543476 |
Target: 5'- aCCAUCGUcgcguCCAGCGUCUUcggcccaauccugGUGGUuuaccuGCa -3' miRNA: 3'- -GGUGGCAu----GGUCGCGGAA-------------CACCGu-----CG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 8755 | 0.66 | 0.544567 |
Target: 5'- -uGCCGUgggcgacuugGCCAGCGUgcg--GGCGGCg -3' miRNA: 3'- ggUGGCA----------UGGUCGCGgaacaCCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 18489 | 0.66 | 0.544567 |
Target: 5'- uUACCGUugCAGCGCga----GCGGCg -3' miRNA: 3'- gGUGGCAugGUCGCGgaacacCGUCG- -5' |
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23030 | 5' | -56.5 | NC_005178.1 | + | 22159 | 0.66 | 0.544567 |
Target: 5'- gCGCUGcUGCCGGUuacGgCUUcUGGCAGCu -3' miRNA: 3'- gGUGGC-AUGGUCG---CgGAAcACCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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