miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 5' -56.5 NC_005178.1 + 10503 1.14 0.000205
Target:  5'- gCCACCGUACCAGCGCCUUGUGGCAGCg -3'
miRNA:   3'- -GGUGGCAUGGUCGCGGAACACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 28317 0.67 0.49106
Target:  5'- aCCAUUGgcggcgGCCAGCGag--GcGGCAGCg -3'
miRNA:   3'- -GGUGGCa-----UGGUCGCggaaCaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 12429 0.66 0.522903
Target:  5'- gCCGCCGg--UAGUgGCCUg--GGCGGCa -3'
miRNA:   3'- -GGUGGCaugGUCG-CGGAacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 19749 0.66 0.566514
Target:  5'- -aACCGU-CCGGCGCCaucUUcUGGCcaAGCc -3'
miRNA:   3'- ggUGGCAuGGUCGCGG---AAcACCG--UCG- -5'
23030 5' -56.5 NC_005178.1 + 20554 0.7 0.339614
Target:  5'- uUACCGggGgCGGCGaCCUUcagcugggcgGUGGCGGCg -3'
miRNA:   3'- gGUGGCa-UgGUCGC-GGAA----------CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 29476 0.69 0.365312
Target:  5'- -aACCGaGCCAGCGCCc---GGCGGg -3'
miRNA:   3'- ggUGGCaUGGUCGCGGaacaCCGUCg -5'
23030 5' -56.5 NC_005178.1 + 21279 0.68 0.40914
Target:  5'- cCgGCCGgggagcggguuUCGGUGCCguccGUGGCGGCg -3'
miRNA:   3'- -GgUGGCau---------GGUCGCGGaa--CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 26260 0.68 0.411036
Target:  5'- aCGCCaGaGCCAGCGCCacgcccGCAGCg -3'
miRNA:   3'- gGUGG-CaUGGUCGCGGaacac-CGUCG- -5'
23030 5' -56.5 NC_005178.1 + 23561 0.67 0.460145
Target:  5'- cCCAgCCGgu-CAGUGCCUUGa-GCAGCc -3'
miRNA:   3'- -GGU-GGCaugGUCGCGGAACacCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 34647 0.67 0.49106
Target:  5'- cUCACCGacucgcccgGCCAGCuCCccgGUGGCAcGCc -3'
miRNA:   3'- -GGUGGCa--------UGGUCGcGGaa-CACCGU-CG- -5'
23030 5' -56.5 NC_005178.1 + 25493 0.67 0.484798
Target:  5'- cCCGCUGUugCAGggaggcggcgaccauCGCCUUGauccgGGCcGCc -3'
miRNA:   3'- -GGUGGCAugGUC---------------GCGGAACa----CCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 22995 0.67 0.460145
Target:  5'- gCACCuggGCCAGCGgCagcUGGUAGCg -3'
miRNA:   3'- gGUGGca-UGGUCGCgGaacACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 24073 0.73 0.202019
Target:  5'- gCugCGUACCAGgGCUUUcUGGCcGCu -3'
miRNA:   3'- gGugGCAUGGUCgCGGAAcACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 3218 0.67 0.490013
Target:  5'- gCC-CC-UGCCAGUGCUUcuccagcagugcaUG-GGCAGCg -3'
miRNA:   3'- -GGuGGcAUGGUCGCGGA-------------ACaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 5349 0.7 0.299757
Target:  5'- uCCAgcUCGcGCCGGC-CCUgaacgGUGGCGGCc -3'
miRNA:   3'- -GGU--GGCaUGGUCGcGGAa----CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 12962 0.68 0.444085
Target:  5'- aCCACCG-GCCAgcaacugcgccgauuGCGCCUUGUccCAGUc -3'
miRNA:   3'- -GGUGGCaUGGU---------------CGCGGAACAccGUCG- -5'
23030 5' -56.5 NC_005178.1 + 3983 0.67 0.490013
Target:  5'- uCCGCuuCGUG-CAGCGCCcaggcUucguugggggucaUGUGGCGGCg -3'
miRNA:   3'- -GGUG--GCAUgGUCGCGG-----A-------------ACACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 9402 0.67 0.501578
Target:  5'- gCGCCGUGCCAG-GCaCUcGUcGCAGg -3'
miRNA:   3'- gGUGGCAUGGUCgCG-GAaCAcCGUCg -5'
23030 5' -56.5 NC_005178.1 + 17211 0.7 0.331344
Target:  5'- gCCACCGU--CAGCGCUcgggcauggGUGGCcGCg -3'
miRNA:   3'- -GGUGGCAugGUCGCGGaa-------CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 21677 0.69 0.382269
Target:  5'- gCCGCCGaguaACCGGCcaucuucGCCUgg-GGCGGUa -3'
miRNA:   3'- -GGUGGCa---UGGUCG-------CGGAacaCCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.