miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 5' -56.5 NC_005178.1 + 6050 0.66 0.522903
Target:  5'- -aGCCGUGaugaagaCGGUGCCgagggGUGGCcGCc -3'
miRNA:   3'- ggUGGCAUg------GUCGCGGaa---CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 19741 0.69 0.374172
Target:  5'- aCCGCCGcgcucgACCGuCGCCaccaUGGCGGCa -3'
miRNA:   3'- -GGUGGCa-----UGGUcGCGGaac-ACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 27664 0.68 0.399741
Target:  5'- gCUGCCGUGggcaugggcgcgcaaCAGCGCCgcuuguucgaucagcGUGGCAGCc -3'
miRNA:   3'- -GGUGGCAUg--------------GUCGCGGaa-------------CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 13115 0.68 0.40161
Target:  5'- gCCACCGcUAuggaggugcuCCAGCGCCU---GGcCAGCu -3'
miRNA:   3'- -GGUGGC-AU----------GGUCGCGGAacaCC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 20980 0.68 0.429318
Target:  5'- gCCAUCGUcguggcgaacgcuACCGGguuCGCCgUGggcGGCAGCa -3'
miRNA:   3'- -GGUGGCA-------------UGGUC---GCGGaACa--CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 13870 0.67 0.470338
Target:  5'- cCCGacCCGaagGCCAGCGCCgcccggcgUGaacgGGcCAGCg -3'
miRNA:   3'- -GGU--GGCa--UGGUCGCGGa-------ACa---CC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 31834 0.66 0.509
Target:  5'- aCGUCGagcUAUCAGCGCCUgcUGUccaccuuggacaacGGCAGCg -3'
miRNA:   3'- gGUGGC---AUGGUCGCGGA--ACA--------------CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 3445 0.66 0.512195
Target:  5'- uCCACCGgccugGCCgAGUcgGCCcugGUGGUGGUc -3'
miRNA:   3'- -GGUGGCa----UGG-UCG--CGGaa-CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 13019 0.66 0.522903
Target:  5'- cCCGCCGUGaaGGUGCagcUGcUGGcCAGCc -3'
miRNA:   3'- -GGUGGCAUggUCGCGga-AC-ACC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 17559 0.69 0.374172
Target:  5'- gCCGCCGaauggcuacaacUGCCGGUGCCgaaucguuccgUUGacGGCGGCc -3'
miRNA:   3'- -GGUGGC------------AUGGUCGCGG-----------AACa-CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 17146 0.69 0.356599
Target:  5'- gCCACCcaUGCCcgAGCGCUgacgGUGGCcaaGGCg -3'
miRNA:   3'- -GGUGGc-AUGG--UCGCGGaa--CACCG---UCG- -5'
23030 5' -56.5 NC_005178.1 + 30633 0.7 0.339614
Target:  5'- gCCACCGauuucggcagcACCAGCGCCUg--GGuCGGUu -3'
miRNA:   3'- -GGUGGCa----------UGGUCGCGGAacaCC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 22943 0.76 0.125827
Target:  5'- gCCGCUGgcCCAGUGCCU-GUGGUgcugaAGCg -3'
miRNA:   3'- -GGUGGCauGGUCGCGGAaCACCG-----UCG- -5'
23030 5' -56.5 NC_005178.1 + 5538 0.75 0.140923
Target:  5'- gUCGCC-UGCCuGCGCCUg--GGCGGCu -3'
miRNA:   3'- -GGUGGcAUGGuCGCGGAacaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 22200 0.72 0.256826
Target:  5'- uCCACCGgcACUGGCGCauaagggGGCAGCu -3'
miRNA:   3'- -GGUGGCa-UGGUCGCGgaaca--CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 12075 0.71 0.263615
Target:  5'- gUugCG-ACCAGCGCCUgguggaGUGGUcGCg -3'
miRNA:   3'- gGugGCaUGGUCGCGGAa-----CACCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 3759 0.71 0.292233
Target:  5'- gCGCCGgGCCAuCGCCaaG-GGCGGCa -3'
miRNA:   3'- gGUGGCaUGGUcGCGGaaCaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 28958 0.7 0.299757
Target:  5'- aUCGCCGUgcGCCAggugacccugcGCGCCccUGgccugGGCGGCa -3'
miRNA:   3'- -GGUGGCA--UGGU-----------CGCGGa-ACa----CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 31296 0.7 0.30743
Target:  5'- -aGCCGUGacCCAGCGCCg---GGCuauGCg -3'
miRNA:   3'- ggUGGCAU--GGUCGCGGaacaCCGu--CG- -5'
23030 5' -56.5 NC_005178.1 + 6565 0.7 0.331344
Target:  5'- gCCuCCGUGCgCAGCGauCCUUGUGGaAGg -3'
miRNA:   3'- -GGuGGCAUG-GUCGC--GGAACACCgUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.