miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23030 5' -56.5 NC_005178.1 + 27664 0.68 0.399741
Target:  5'- gCUGCCGUGggcaugggcgcgcaaCAGCGCCgcuuguucgaucagcGUGGCAGCc -3'
miRNA:   3'- -GGUGGCAUg--------------GUCGCGGaa-------------CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 13115 0.68 0.40161
Target:  5'- gCCACCGcUAuggaggugcuCCAGCGCCU---GGcCAGCu -3'
miRNA:   3'- -GGUGGC-AU----------GGUCGCGGAacaCC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 21279 0.68 0.40914
Target:  5'- cCgGCCGgggagcggguuUCGGUGCCguccGUGGCGGCg -3'
miRNA:   3'- -GgUGGCau---------GGUCGCGGaa--CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 26260 0.68 0.411036
Target:  5'- aCGCCaGaGCCAGCGCCacgcccGCAGCg -3'
miRNA:   3'- gGUGG-CaUGGUCGCGGaacac-CGUCG- -5'
23030 5' -56.5 NC_005178.1 + 20980 0.68 0.429318
Target:  5'- gCCAUCGUcguggcgaacgcuACCGGguuCGCCgUGggcGGCAGCa -3'
miRNA:   3'- -GGUGGCA-------------UGGUC---GCGGaACa--CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 12962 0.68 0.444085
Target:  5'- aCCACCG-GCCAgcaacugcgccgauuGCGCCUUGUccCAGUc -3'
miRNA:   3'- -GGUGGCaUGGU---------------CGCGGAACAccGUCG- -5'
23030 5' -56.5 NC_005178.1 + 22995 0.67 0.460145
Target:  5'- gCACCuggGCCAGCGgCagcUGGUAGCg -3'
miRNA:   3'- gGUGGca-UGGUCGCgGaacACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 23561 0.67 0.460145
Target:  5'- cCCAgCCGgu-CAGUGCCUUGa-GCAGCc -3'
miRNA:   3'- -GGU-GGCaugGUCGCGGAACacCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 32682 0.67 0.460145
Target:  5'- aCCGCuCGgcgACCGG-GUCUUGUacaGCAGCg -3'
miRNA:   3'- -GGUG-GCa--UGGUCgCGGAACAc--CGUCG- -5'
23030 5' -56.5 NC_005178.1 + 13870 0.67 0.470338
Target:  5'- cCCGacCCGaagGCCAGCGCCgcccggcgUGaacgGGcCAGCg -3'
miRNA:   3'- -GGU--GGCa--UGGUCGCGGa-------ACa---CC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 25493 0.67 0.484798
Target:  5'- cCCGCUGUugCAGggaggcggcgaccauCGCCUUGauccgGGCcGCc -3'
miRNA:   3'- -GGUGGCAugGUC---------------GCGGAACa----CCGuCG- -5'
23030 5' -56.5 NC_005178.1 + 3218 0.67 0.490013
Target:  5'- gCC-CC-UGCCAGUGCUUcuccagcagugcaUG-GGCAGCg -3'
miRNA:   3'- -GGuGGcAUGGUCGCGGA-------------ACaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 3983 0.67 0.490013
Target:  5'- uCCGCuuCGUG-CAGCGCCcaggcUucguugggggucaUGUGGCGGCg -3'
miRNA:   3'- -GGUG--GCAUgGUCGCGG-----A-------------ACACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 28317 0.67 0.49106
Target:  5'- aCCAUUGgcggcgGCCAGCGag--GcGGCAGCg -3'
miRNA:   3'- -GGUGGCa-----UGGUCGCggaaCaCCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 34647 0.67 0.49106
Target:  5'- cUCACCGacucgcccgGCCAGCuCCccgGUGGCAcGCc -3'
miRNA:   3'- -GGUGGCa--------UGGUCGcGGaa-CACCGU-CG- -5'
23030 5' -56.5 NC_005178.1 + 9402 0.67 0.501578
Target:  5'- gCGCCGUGCCAG-GCaCUcGUcGCAGg -3'
miRNA:   3'- gGUGGCAUGGUCgCG-GAaCAcCGUCg -5'
23030 5' -56.5 NC_005178.1 + 31834 0.66 0.509
Target:  5'- aCGUCGagcUAUCAGCGCCUgcUGUccaccuuggacaacGGCAGCg -3'
miRNA:   3'- gGUGGC---AUGGUCGCGGA--ACA--------------CCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 3445 0.66 0.512195
Target:  5'- uCCACCGgccugGCCgAGUcgGCCcugGUGGUGGUc -3'
miRNA:   3'- -GGUGGCa----UGG-UCG--CGGaa-CACCGUCG- -5'
23030 5' -56.5 NC_005178.1 + 13019 0.66 0.522903
Target:  5'- cCCGCCGUGaaGGUGCagcUGcUGGcCAGCc -3'
miRNA:   3'- -GGUGGCAUggUCGCGga-AC-ACC-GUCG- -5'
23030 5' -56.5 NC_005178.1 + 6050 0.66 0.522903
Target:  5'- -aGCCGUGaugaagaCGGUGCCgagggGUGGCcGCc -3'
miRNA:   3'- ggUGGCAUg------GUCGCGGaa---CACCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.